Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00928 TTGGAACGAACGGACGTGTCTCCGATGTCTTCCTCTTACCGTGACCGCACCTCGGAGTTCCGGTTACTGTCGGAGACTCTGAAGAAGATCGAAGGAGGGACCTCGCCTTCGGTTCAACCCGAGATTGCTTCTTCCACCTCTCACGATTCCTATTCAAGATCTGAATTCAACCGAAAGGCCTCACGAATCGGGTTGGGGATCAATGAAACCTCACAGAAGGTGGCGAGGCTCGCGCAGCTGGCGAGGAGGTCGTCTATGTTCAACGATCCGGCCGTGGAGATTCAGGAGCTGACTGTGCTGATTAAGAACGAGATCACGGCGCTGAATTCGGCTCTCTCCGATTTGCAAGCCATTCAGAACATGGACATGGCTGATGGAAGTTACTCGCAGGATAGGATTGTGCATTCAACCGCGGTTTGTGATGACTTGAAGAGCAAACTAATGGGAGCCACGAAGCATCTTCAAGATGTCTTAACTGCTAGGACAGAGGCTAAGTTGGCAACTGAGTTTCGTTTTATCCATGGTCAGTATGAAACACCCTGTTATATTCTTACCGCAGCAAAAATAATTGTGTCCAACATGTATCGATATGTCTTAGTTCTTAATGCTGAAAGATTTAAGAAGAGTAGAGGACAGACAAGGTTGTGGAACATTAGTGGAGATGCAAATGGTCCATTTGATAATGCTGGTCTTGAATTAGCTAAGTTGTATCTTGATGAACCCGAGTTGAAGTTATGTTGTTCCGATGATAATATCAAGGCTCACGAGAGCAGGAAGCAGATTTTTTCCAAGAATGCATCAAGGGAGAACCCTTTCCAGCATCAACCAAAACCCGCTACTGAGCCGCCTCCTTGGTCAAATTCATTGAATGCATATGACAATCTGCAACAAGAATCGGTATTACCATCAAATGGAGCTCCTGTTAGCAATCAACTAAGACGAAGGTTGGCAGTGGACAACACTCCAACTCAGCAAATGGAAATGTCTATGGTGCAGCAGGTTGTTCCTCGGCAAGAAAACTACACTCAAAGTAGGTCAACTGCTCTGCACAATGTGGAGTCTACCATCACAGAACTTAGTGGGATTTTCTCGCATTTGGCTACAATGGTTGCCCATCAAGGGGAGCTTGCTATCAGGATTGATGACAACATGGATGAGTCATTAGCGAATGTTGAAGGAGCTCACAGCTCTTTATTGAGGCATCTCAACCGAATATCATCAAATAGGTGGCTTCTAATAAAGATATTTGCCGTTCTGATACTTTTCCTCTTGATCTTCATATTCTTTGTGGCGTAA 1296 0.4545 MERTDVSPMSSSYRDRTSEFRLLSETLKKIEGGTSPSVQPEIASSTSHDSYSRSEFNRKASRIGLGINETSQKVARLAQLARRSSMFNDPAVEIQELTVLIKNEITALNSALSDLQAIQNMDMADGSYSQDRIVHSTAVCDDLKSKLMGATKHLQDVLTARTEAKLATEFRFIHGQYETPCYILTAAKIIVSNMYRYVLVLNAERFKKSRGQTRLWNISGDANGPFDNAGLELAKLYLDEPELKLCCSDDNIKAHESRKQIFSKNASRENPFQHQPKPATEPPPWSNSLNAYDNLQQESVLPSNGAPVSNQLRRRLAVDNTPTQQMEMSMVQQVVPRQENYTQSRSTALHNVESTITELSGIFSHLATMVAHQGELAIRIDDNMDESLANVEGAHSSLLRHLNRISSNRWLLIKIFAVLILFLLIFIFFVA 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00928 431 Gene3D - 330 431 - -
Vimu1g00928 431 Pfam SNARE domain 376 427 IPR000727 -
Vimu1g00928 431 CDD SNARE_syntaxin5 343 418 - -
Vimu1g00928 431 PANTHER SYNTAXIN 54 426 IPR045242 -
Vimu1g00928 431 Gene3D - 49 186 - -
Vimu1g00928 431 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 339 401 IPR000727 -
Vimu1g00928 431 MobiDBLite consensus disorder prediction 263 290 - -
Vimu1g00928 431 MobiDBLite consensus disorder prediction 31 51 - -
Vimu1g00928 431 ProSitePatterns Syntaxin / epimorphin family signature. 345 384 IPR006012 GO:0005484|GO:0006886|GO:0016020
Vimu1g00928 431 SMART tSNARE_6 334 401 IPR000727 -
Vimu1g00928 431 MobiDBLite consensus disorder prediction 31 55 - -
Vimu1g00928 431 SUPERFAMILY t-snare proteins 52 394 IPR010989 GO:0016020|GO:0016192
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00928 Vimu-Chr1 6487157 6494225 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g00928 245 431 SNARE and Associated Proteins AT5G05760 65.426 7.18e-75 235
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00928 K08490 - gmx:100777383 296.589
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g00928 1 6487157 6494225 Vimu1g00928 1 6487157 6494225 ECH