Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00923 ATGGCTCTAAGCGTAGTAATGTTTCTTCTCAGTGTTGTTTCACAAACCTTGGTGTACATGACACCGGCTACGGTTGCTCTTGTTTTGAGTTCAGAGAGTGATAAGGTGGCTTTGCTTGCGTTGAAGAAGAAGCTTACCAATGGAGTGTCTAATTCTCTTCCATCATGGAATCACTCTATGCATTTATGCGAATGGCAGGGTGTAACATGCAGTCGCCGCCACATGAGAGTCTCTGTCTTGCACTTGGAAAATCAGAACTGGAATGGTACTCTTGGACCATCCTTGGGAAATCTAACCTTTCTCAGAGTCCTCATTCTTTCCAACATCAACTTGCATGGTGAAATTCCAACACAAATTGGTCGACTAAAGAGGTTGCAGCTTCTTGACTTAAGTCACAACAATCTAAATGGTCAGATTCCTGAACACCTTACCAACTGCTCTAAACTTGAGGTCATTAACTTTTTGTACAACAAACTCAGTGGAAAACTTCCCTCCTGGTTTGGAGGTGGAACCATGACACGGCTAAATAAGTTGCTTCTTGGTGCCAATGATCTAGTTGGTACCATCCCACCTTCCTTGGGGAATCTTTCATCCCTCCAAAATATCACAGTGGCAAGAAATCATTTGGTGGGAAGTATACCAGATGTTTTGGGTCGATTATCAAATTTGAAGGAGCTGAATCTTGGTTTAAACAATTTGTCAGGAGTAGTGCCTATTTCACTTTATAATCTTTCCAATATTCAAGTTTTTGTTCTAGGAGAAAACCAGTTATCTGGTATTCTTCCATCAAAAATGCAACTTGCTTTTCAAAACCTTAGAGCGTTTTTGGTTGGAGGGAACCAGTTCAGTGGAACTTTCCCGTCTTCAATATCCAACATCACCGGATTGCAAGCATTTGTGATCTCCTCAAATGGTTTTAGTGGGCCAATTCCTCCCACTTTGGGAAGCTTAAATAAACTTCAACTGTTTCACATTGGTTATAATAGTTTTGGAAGTGGTAAAGAGAGTGATTTGGATTTCCTTTCATCATTAACCAATTGTACTCAATTGCGCCAACTTTTTTTGGATGACAATGGATTTGGTGGTGTGTTGCCAGATCTCATAGGCAATTTTTCTACTCACCTGACAACTCTTAGTATGTGGTCGAATCGAATATCTGGAAAGATACCTGAAGGAATTGGGCAGCTACTCAGTTTAACTGACTTCATCATGTTAGATAATTATCTGGAGGGAACTATTCCAGATTCAATTGGAAGGCTTAAAAATCTAGTAAGACTGGTCCTGCAAGAAAACAAATTATCGGGTAATATTCCTACGAGCATTGGCAATCTTACTATGTTGTCTGAACTTTATTTGCACACAAATGGGTTTGTTGGAGGCATTCCATTAAGTCTCAAATACTGCACGCAAATGGAGTCAATTGGTGTTTCCACCAACAACTTGAATGGAGATATCCCTAATCAAACATTTGGCAATTTGGAAGGTTTGGTAGAACTTGACTTATCTTACAATTCTTTCACTGGTTCCATACCTTCAGAGTTTGGAAACTTGAAGCACCTTTCCGTATTATATCTTCAAGGAAACAAATTGTCTGGTGAAATGCCCAAAGAGCTTGGCGCTTGTTCCGGGTTGACAGAGCTTATGTTGCAGTGTAACTTCTTCCGCGGAAGCATACCTTCGTTCTTGGGCTCTTTAGGATCCCTTGAATTCCTCGACCTTTCTAACAACAGCTTCTCAAGCACAATCCCTGTCGAATTACAAAAGTTGACTTACTTAATTACTCTCAACTTCTCTTTTAACCATCTTTATGGTGAGGTTCCCACAGGAGGTGTCTTTAATAATGTTACAGCAATTTCACTTATTGGAAATAAGGATCTCTGTGGGGGAATCCCTCAACTGAAGCTTCCTGCATGTTCTAAGTTGCCTTCAAAGAAACACAAGTGGTCTTACAGAAAGAAACTCATTCTCATCATTGCAATTGTCGTTGGAGTGGGTTTGGTTACTTCAACACTGTTTATCAGCATCTATTTGTTCAGGAAAAGGCCCAAAACACCATCGACTTCATGGTCTCCAAGAAATAAGTACGCAAAGGTTTCCTATGGAGATTTACATAAAGCAACCAATGGATTTTCTTCATCCAATTTGGTAGGGTCTGGAGGCTTTGGTTCTGTATATAGTGGATCTCTTCTCCCTTTCAAAACACCTGTTGCTGTGAAGGTATTGAATCTTGAAACAGTTGGGGCATCAAAGAGTTTCGAAGCTGAGTGCAAAGCTTTAGGAAGGATCATGCATCGGAATCTTCTGAACATCTTGACTTGTTGTTCAAGTATTGATTATAACGGTAAAGATTTCAAGGCTATAGTGTTTGAGTTCATGCCTAATGGCAGTCTAGAAAGTTTGCTGCACGACAACTCTAGAAATTTGAGTGTGAACCTTGATCTTGTGGTAAATATTGCTCTTGATGTTGCAAATGCATTGGATTATCTTCATAATGGTTCTGAGGAAGCTGTAGTTCACTGTGATGTTAAGCCAAGCAACGTTCTTCTTGATGATGACATAGTTGCTCACTTGGGAGATTTTGGGTTAGCAAGGCTCCTTCATGTGGGGACGGGACATTCCAGCAGAGATGAGGTTAGTTCCTCCGCAATTAGAGGAACCGTTGGATATGTTCCACCAGAGTACGGAACAGGTTGTGGAGTATCAACGAAAGGGGATATCTACAGCTATGGAATTCTTGTGTTGGAAATGCTGACAGGAAGGAAACCAATAGATGCAGTGTTTGGTGAGGGTCTAAGCCTACACAAGTTCTGCCAAATGGCAATTCCAGAAGGAATCACTGAGATAACAGATTCACGTTTGCTTGTGTCAAATGTTGAAGAAGGAAGAAGGGTGATGGAAAGCAAAATAAGGGAGTGTTTGGTGGGCTTAGCTGGGATTGGAGTTGGGTGTTCTGCAGAATTAGCTGTTGAACGAATGGACATAAAAGATGTGATATTGGAACTGCACTCTATCAAACAGAGGCTGTATCACTAA 3033 0.4075 MALSVVMFLLSVVSQTLVYMTPATVALVLSSESDKVALLALKKKLTNGVSNSLPSWNHSMHLCEWQGVTCSRRHMRVSVLHLENQNWNGTLGPSLGNLTFLRVLILSNINLHGEIPTQIGRLKRLQLLDLSHNNLNGQIPEHLTNCSKLEVINFLYNKLSGKLPSWFGGGTMTRLNKLLLGANDLVGTIPPSLGNLSSLQNITVARNHLVGSIPDVLGRLSNLKELNLGLNNLSGVVPISLYNLSNIQVFVLGENQLSGILPSKMQLAFQNLRAFLVGGNQFSGTFPSSISNITGLQAFVISSNGFSGPIPPTLGSLNKLQLFHIGYNSFGSGKESDLDFLSSLTNCTQLRQLFLDDNGFGGVLPDLIGNFSTHLTTLSMWSNRISGKIPEGIGQLLSLTDFIMLDNYLEGTIPDSIGRLKNLVRLVLQENKLSGNIPTSIGNLTMLSELYLHTNGFVGGIPLSLKYCTQMESIGVSTNNLNGDIPNQTFGNLEGLVELDLSYNSFTGSIPSEFGNLKHLSVLYLQGNKLSGEMPKELGACSGLTELMLQCNFFRGSIPSFLGSLGSLEFLDLSNNSFSSTIPVELQKLTYLITLNFSFNHLYGEVPTGGVFNNVTAISLIGNKDLCGGIPQLKLPACSKLPSKKHKWSYRKKLILIIAIVVGVGLVTSTLFISIYLFRKRPKTPSTSWSPRNKYAKVSYGDLHKATNGFSSSNLVGSGGFGSVYSGSLLPFKTPVAVKVLNLETVGASKSFEAECKALGRIMHRNLLNILTCCSSIDYNGKDFKAIVFEFMPNGSLESLLHDNSRNLSVNLDLVVNIALDVANALDYLHNGSEEAVVHCDVKPSNVLLDDDIVAHLGDFGLARLLHVGTGHSSRDEVSSSAIRGTVGYVPPEYGTGCGVSTKGDIYSYGILVLEMLTGRKPIDAVFGEGLSLHKFCQMAIPEGITEITDSRLLVSNVEEGRRVMESKIRECLVGLAGIGVGCSAELAVERMDIKDVILELHSIKQRLYH 1010
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00923 1010 ProSitePatterns Protein kinases ATP-binding region signature. 716 739 IPR017441 GO:0005524
Vimu1g00923 1010 SUPERFAMILY Protein kinase-like (PK-like) 683 950 IPR011009 -
Vimu1g00923 1010 Pfam Leucine rich repeat 198 257 IPR001611 GO:0005515
Vimu1g00923 1010 Pfam Leucine rich repeat 472 530 IPR001611 GO:0005515
Vimu1g00923 1010 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 71 337 - -
Vimu1g00923 1010 ProSiteProfiles Protein kinase domain profile. 710 1010 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g00923 1010 Pfam Protein kinase domain 712 939 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g00923 1010 Gene3D Ribonuclease Inhibitor 167 335 IPR032675 -
Vimu1g00923 1010 Gene3D Ribonuclease Inhibitor 336 647 IPR032675 -
Vimu1g00923 1010 SUPERFAMILY RNI-like 269 608 - -
Vimu1g00923 1010 FunFam LRR receptor-like serine/threonine-protein kinase EFR 338 644 - -
Vimu1g00923 1010 ProSitePatterns Serine/Threonine protein kinases active-site signature. 837 849 IPR008271 GO:0004672|GO:0006468
Vimu1g00923 1010 SMART serkin_6 710 973 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g00923 1010 Gene3D Ribonuclease Inhibitor 33 166 IPR032675 -
Vimu1g00923 1010 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 343 1002 - -
Vimu1g00923 1010 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 792 1010 - -
Vimu1g00923 1010 FunFam LRR receptor-like serine/threonine-protein kinase EFR 681 791 - -
Vimu1g00923 1010 SUPERFAMILY L domain-like 55 329 - -
Vimu1g00923 1010 SMART LRR_typ_2 172 196 IPR003591 -
Vimu1g00923 1010 SMART LRR_typ_2 420 444 IPR003591 -
Vimu1g00923 1010 SMART LRR_typ_2 220 243 IPR003591 -
Vimu1g00923 1010 SMART LRR_typ_2 493 516 IPR003591 -
Vimu1g00923 1010 SMART LRR_typ_2 122 146 IPR003591 -
Vimu1g00923 1010 SMART LRR_typ_2 517 541 IPR003591 -
Vimu1g00923 1010 SMART LRR_typ_2 244 271 IPR003591 -
Vimu1g00923 1010 SMART LRR_typ_2 565 588 IPR003591 -
Vimu1g00923 1010 Gene3D Transferase(Phosphotransferase) domain 1 792 1009 - -
Vimu1g00923 1010 Gene3D Phosphorylase Kinase; domain 1 691 791 - -
Vimu1g00923 1010 Pfam Leucine rich repeat N-terminal domain 32 71 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00923 Vimu-Chr1 6433436 6436771 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g00923 29 1009 Receptor kinase-like Gene Family AT3G47570 43.944 0.0 754
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Vimu1g00923 Pkinase 1.7e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00923 - - gmx:100777490 1494.18