Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00918 ATGGCATCTTTCATCACTCCACTCATCCTTCTCTTCATCTCCGCTATCTTCCTTTTCCTCCACCGCCGATCCCGTTACCGCCGCCTCCGCCTCCGCCTCCCCCCGGGCACCCTCGGCCTCCCCTTCGCCGGAGAGACCCTGCAGCTCATATCAGCCTACAAGACCGACAACCCCGAACCATTCATCGACCACCGCGTCCACCGCTACGGCCCAATTTTTACCACCCATCTCTTTGGCGAACCCACCGTCTTCTCCGCAGACCCGGAGACCAACCGCTTCATTCTGCTCAACGAAGGGAAACTCTTCGAATGCAGCTACCCCGGTTCCATATCCAACCTCCTTGGAAAACACTCTCTGCTTCTCATGAAGGGCTCTCTTCACAAGAGAATGCACTCCCTCACCATGAGTTTCGCCAACTCTTCCATCATCAAGGATCACTTGCTCGTTGACATAGACCGTCTCATCCGGCTCAACCTCGATTCCTGGTCCGACCGGATTTTTCTCATGGAAGAAGCCAAAAAGTGTGATTTACGTGATGGAAATGGAACTGGAGTTGGTGACTCAGATTCCATGGTTTGGTATAATGTGTCCAGTTCCATAACGTTTGAGTTGACAGTGAAGCAGTTGATGAGCTTTGATCCAGGTGAATGGACTGAGACTCTAAGGAAAGAGTACGTTCTTGTGATAGAAGGATTTTTCACTCTTCCATTGCCTCTCTTTTCGACCACCTACCGCAGAGCCATCAAGGCCAGGACGAAGGTGGCAGAGGCATTAACGTTGATAGTGAGGGAGAGAAGAAAAGAAAGCGCAAAGGAGGAGAAAAAGAATGACATGCTAGGGGCATTGTTGGCCTCCGGCAACAACTTTTCCGACGAGGAAATAGTGGATTTTATGTTGGCTTTGCTCGTCGCCGGTTATGAAACCACCTCCACCATAATGACTCTTGCCGTCAAGTTCCTCACGGAGACTCCTCTAGCATTGGCACAACTCAAGGAAGAGCATGACCAGATCAGAGCCAAAAAGAGTCACCCAGAAGAACCACTGGAGTGGACAGATTACAAGTCAATGGCGTTTACTCAATGCGTTGTGAATGAGACTTTGAGGGTGGCAAACATTATTGGTGGGATATTTAGAAGAGCAATGACAGACATAAACATAAAAGGTTACACTATTCCAAAGGGATGGAGGGTCTTTGCTTCATTTCGTGCCGTACATCTAAACCCTGATCACTACAAAGATGCGCGCACCTTCAATCCGTGGAGATGGCAGAGTAACTCAGAAGCAACAAGCCCTGGGAATGTATATACCCCTTTTGGAGGAGGACCACGTCTTTGCCCTGGTTATGAGCTTGCCAGAGTGGTGCTCTCTGTCTTTCTTCACCGTACTGTCACCCGTTACAGGTACTGCACCAAACCAAAGACGCAGAAGAGGTATCCTATCATAGTGAAGCGCAGAGAGGAGTCCAAACCAAGTAATCAAACATGGAAGGGCAAAGAAGAAGAATCAGAGATAGAGATTGTAGATTAG 1527 0.4918 MASFITPLILLFISAIFLFLHRRSRYRRLRLRLPPGTLGLPFAGETLQLISAYKTDNPEPFIDHRVHRYGPIFTTHLFGEPTVFSADPETNRFILLNEGKLFECSYPGSISNLLGKHSLLLMKGSLHKRMHSLTMSFANSSIIKDHLLVDIDRLIRLNLDSWSDRIFLMEEAKKCDLRDGNGTGVGDSDSMVWYNVSSSITFELTVKQLMSFDPGEWTETLRKEYVLVIEGFFTLPLPLFSTTYRRAIKARTKVAEALTLIVRERRKESAKEEKKNDMLGALLASGNNFSDEEIVDFMLALLVAGYETTSTIMTLAVKFLTETPLALAQLKEEHDQIRAKKSHPEEPLEWTDYKSMAFTQCVVNETLRVANIIGGIFRRAMTDINIKGYTIPKGWRVFASFRAVHLNPDHYKDARTFNPWRWQSNSEATSPGNVYTPFGGGPRLCPGYELARVVLSVFLHRTVTRYRYCTKPKTQKRYPIIVKRREESKPSNQTWKGKEEESEIEIVD 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00918 508 PRINTS P450 superfamily signature 361 372 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu1g00918 508 PRINTS P450 superfamily signature 304 321 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu1g00918 508 PRINTS P450 superfamily signature 445 456 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu1g00918 508 PRINTS P450 superfamily signature 436 445 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu1g00918 508 PANTHER CYTOCHROME P450 26 29 469 - -
Vimu1g00918 508 SUPERFAMILY Cytochrome P450 25 485 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu1g00918 508 CDD CYP90-like 65 484 - -
Vimu1g00918 508 MobiDBLite consensus disorder prediction 486 508 - -
Vimu1g00918 508 Gene3D Cytochrome P450 24 490 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu1g00918 508 PRINTS E-class P450 group I signature 293 310 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu1g00918 508 PRINTS E-class P450 group I signature 400 424 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu1g00918 508 PRINTS E-class P450 group I signature 313 339 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu1g00918 508 PRINTS E-class P450 group I signature 435 445 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu1g00918 508 PRINTS E-class P450 group I signature 360 378 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu1g00918 508 PRINTS E-class P450 group I signature 445 468 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu1g00918 508 PRINTS E-class P450 group I signature 66 85 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu1g00918 508 Pfam Cytochrome P450 34 477 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu1g00918 508 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 438 447 IPR017972 GO:0005506|GO:0016705
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00918 Vimu-Chr1 6391550 6396175 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g00918 122 486 Cytochrome P450 AT5G05690 71.809 0.0 533
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00918 K09588 - gmx:100775886 785.408
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g00918 1 6391550 6396175 Vimu1g00918 1 6391550 6396175 ECH
Vimu6g01734 6 15800503 15804849 Vimu1g00918 1 6391550 6396175 PCT