Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00917 ATGGCGGGGAAACTGGCAAAGGCAGCTTATGATGCAAAGATGTTGAAGCTTCTGAGAGAGTACAGTCAGGTACTGGTGGTTTCATCTGACAATGTGGGTTCAAACCAGCTTCAGGGGATACGGAGGGGACTCCATGCTGATTCAGTTGTGGTTATGGGAAAGAACTCCTTGATGAAACGCTCTATCATCTTGGACGCTCAGAAGACTGGCAACAAGGCCTTCCTTAACCTTGTCCCCCTTCTTGTGGGGAATGTGGCATTAATTTTCACCAAAGGTGACATAAGGGAGGTCAGCGAACAGATTGCCAAGTACAAGATTGTTCAACCGATTCTAATGTGCCCCAAGTATATGTCACATGACACATACCAGAATTGTTCCTATATGCAATCTGGACAGTTACCTTTGGGCCTCACATGTTGTAATCAGCAGCAGTCTTCACAGGTTTCCGAACCTTTTCTTGTATGCTCAAAATTCCACCCACACCAACATTGTTTCATGATGAGATCAAGGCAGTTCTTGATGACAAGTATATGGTCTCCTCTTCTCCTTTTGGCTGGCAACTTGTGA 567 0.4533 MAGKLAKAAYDAKMLKLLREYSQVLVVSSDNVGSNQLQGIRRGLHADSVVVMGKNSLMKRSIILDAQKTGNKAFLNLVPLLVGNVALIFTKGDIREVSEQIAKYKIVQPILMCPKYMSHDTYQNCSYMQSGQLPLGLTCCNQQQSSQVSEPFLVCSKFHPHQHCFMMRSRQFLMTSIWSPLLLLAGNL 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00917 188 FunFam 60S acidic ribosomal protein P0 4 135 - -
Vimu1g00917 188 Pfam Ribosomal protein L10 6 104 IPR001790 -
Vimu1g00917 188 Gene3D - 4 136 IPR043141 -
Vimu1g00917 188 SUPERFAMILY Ribosomal protein L10-like 7 104 IPR043141 -
Vimu1g00917 188 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P0 6 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00917 Vimu-Chr1 6385866 6389980 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g00917 7 109 Cytoplasmic Ribosomal Protein Gene Family AT2G40010 66.019 3.31e-44 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00917 K02941 - mnt:21409050 157.532