Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00908 ATGAAGAAGAATAATTCAATCTTCTCCGCCGTTACCTTCACCCTCTTCACTGTCACCCTCTTAATCATCTCTTCACTGTCACCCTCCCATGCCATTGGTTCCGCCTCCACTCTCGCCGTCACCTCTGCCGCCATCTGCGGCGTGGTGGCAGCGGAGCCGACACGGCGCATTGCGTGCTACAGCGATGGCCATGTCGTCGCCGTTGCTCCCAACATCTCGTTCTCCGTGATCTCCGGCGGCCTGAGCTACTTCTGCGGCCTCCGCTCCGGCAACTACACTCTTCTCTGCTGGGACACCCTTTCCTACTTCCAAAGCAAGAGACTTTACAACAATGGCACTGTTCTATTCGAGAATCTCGCCCTCGGGGACTTCCAGGTTTGCGCCACCGCGGTCGGCGATGGAGCGGTGTCGTGTTGGAGAACCAATGCCGCCTTCGAATTGCCTTCTAGGTCGGACCGGTTTTCTTCTATTTCGTCTGGTTCGGGTTTTTCTTGCGGAATTTTGAAGGGTAGTAATTGGGTTCGGTGTTGGGGGGTTGAGGCTAGAGCGAGAAAAATGGAGAGTGAGTTTGGGAACGTGTCTATGGCGAGTCTTGTGGCTGGGGAGTCACATGTTTGTGGGTTGAATTCAAGTGGGTATTTGGTTTGTAGAGGAAGTAACGATTTTGGTCAGATTGATGTTCCTGAAGGAGGGGCTTTGGAGTTTTCTGGTCTGGCTCTTGGAGCTGAGCATAGTTGTGCTATTCGGAGATACAATGGTTCTGTCGTTTGTTGGGGTGGGAGAGGGTTGTTTGAGGTTAATGCCACAAAAGGTGTTTCTTTTGAGGTTCTTGTTTCTGGGTCTAATTTTACTTGTGGATTGACGACTAACAATTTTTCAGTTATTTGTTGGGGTCCTGGTTGGGCTAATACTTCAGGTTATGAAATTCCTTTGCCTCCTATACTTCCAGGGCCTTGCGTTCAATCTTCCTGCAGTGAATGTGGGATATATCCTCAATCCGATTCTCTCTGTTCTGGCTATGGTAACATCTGTAAGCCAAGACCTTGTTGGCCTCCAATGCCAGGGCCAGAACCACCACAAATGGCACCGCCGCCTGTGGTGGCGGTGCCACCTGCGTCTCGGTCAAGTGCCTTCACCAAAGGGTTATTGGCATTTGCCATTGTTGGATGCTTGGGAGGTGTTACTGGGATATGCAGCGTGATTTATTGCTTATGGACTGGGGTTTGTTTAGGGAAGAAGAAAATTCACAATTCTGTGCAGCCAACAATCACTAGAGGTGGCAGTGTAAACGGTGGTGGTGGTTCTAGCAATAGTATTAGTCCTCCGTCGAGATCATCCACCATTAGGCGTCAAGGGTCGCGGATAATGAGACGCCAAAGGAGTGGAACCTCATCAACAAAGCATCCTGAAAGGGCTGAGGAATTCACCTTGGCTGAACTTGTTGCAGCTACGGATAATTTCTCCCTTGAGAACAAGATTGGTGCTGGAAGCTATGGCGTTGTTTATAGAGGCAAACTTGCAGATGGCCGTGAGGTGGCAATCAAAAGGGGCGAAACAGGTACAAAGATGAAGAAGTTTCAAGAGAAAGAGAGCGCATTCGAGTCAGAATTGGCCTTCTTGTCCCGTTTACACCACAAGCACTTGGTAAGGCTGGTGGGGTTCTGTGAGGAGAAAGACGAGAGGCTCTTGGTGTATGAGTACATGAAGAATGGAGCATTGTATGATCATTTGCATGACAAAAACAATGTGGACAAGAGTAGCAGTGTCTTGAATTCTTGGCGAATGAGGATCAAAATCGCTCTGGATGCTTCGCGAGGAATTGAATATCTCCATAACTACGCAGTTCCATCTATAATTCACCGAGACATAAAGTCTTCAAACATTCTCATTGACGCGACTTGGACTGCGAGAGTATCCGATTTTGGATTGTCATTGATGAGTCCAGAATCTGACCTTGATTACCGGCCAACGAAGGCAGCAGGAACAGTAGGATATATTGATCCTGAATATTATGGTCTAAATGTATTGACAGCAAAGAGTGATGTCTATGGTCTTGGGGTGGTACTGCTAGAGCTATTAACAGGAAAGAGAGCAATATTCAAGAATGATGAAAATGGAGGCACCCCAGTGAGTTTGGTGGACTTTGCAGTGCCAGTTATTATGGCAGGAGAATTGGCAAAAATTTTGGACCCAAGGGTTGAACCACCAGAGTTAAATGAGACAGAAGCAGTGGAGCTAGTGGCATATACAGCTATGCATTGTGTAAATTTGGAGGGGAAGGACAGACCAACAATGGCTGATATTGTGGCAAATTTGGAGCGTGCTTTGGCTCTTTGTGATAGTAGTCATGGCAGCATTTCCAGTGGTACAGTCTCCATTGTATCAGACTGA 2391 0.4789 MKKNNSIFSAVTFTLFTVTLLIISSLSPSHAIGSASTLAVTSAAICGVVAAEPTRRIACYSDGHVVAVAPNISFSVISGGLSYFCGLRSGNYTLLCWDTLSYFQSKRLYNNGTVLFENLALGDFQVCATAVGDGAVSCWRTNAAFELPSRSDRFSSISSGSGFSCGILKGSNWVRCWGVEARARKMESEFGNVSMASLVAGESHVCGLNSSGYLVCRGSNDFGQIDVPEGGALEFSGLALGAEHSCAIRRYNGSVVCWGGRGLFEVNATKGVSFEVLVSGSNFTCGLTTNNFSVICWGPGWANTSGYEIPLPPILPGPCVQSSCSECGIYPQSDSLCSGYGNICKPRPCWPPMPGPEPPQMAPPPVVAVPPASRSSAFTKGLLAFAIVGCLGGVTGICSVIYCLWTGVCLGKKKIHNSVQPTITRGGSVNGGGGSSNSISPPSRSSTIRRQGSRIMRRQRSGTSSTKHPERAEEFTLAELVAATDNFSLENKIGAGSYGVVYRGKLADGREVAIKRGETGTKMKKFQEKESAFESELAFLSRLHHKHLVRLVGFCEEKDERLLVYEYMKNGALYDHLHDKNNVDKSSSVLNSWRMRIKIALDASRGIEYLHNYAVPSIIHRDIKSSNILIDATWTARVSDFGLSLMSPESDLDYRPTKAAGTVGYIDPEYYGLNVLTAKSDVYGLGVVLLELLTGKRAIFKNDENGGTPVSLVDFAVPVIMAGELAKILDPRVEPPELNETEAVELVAYTAMHCVNLEGKDRPTMADIVANLERALALCDSSHGSISSGTVSIVSD 796
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00908 796 ProSitePatterns Protein kinases ATP-binding region signature. 493 515 IPR017441 GO:0005524
Vimu1g00908 796 MobiDBLite consensus disorder prediction 421 450 - -
Vimu1g00908 796 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN CCR4 194 782 IPR044815 GO:0004674
Vimu1g00908 796 SMART serkin_6 487 776 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g00908 796 Pfam Regulator of chromosome condensation (RCC1) repeat 196 224 - -
Vimu1g00908 796 SUPERFAMILY RCC1/BLIP-II 68 301 IPR009091 -
Vimu1g00908 796 Gene3D - 61 189 IPR009091 -
Vimu1g00908 796 ProSiteProfiles Protein kinase domain profile. 487 776 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g00908 796 SUPERFAMILY Protein kinase-like (PK-like) 465 772 IPR011009 -
Vimu1g00908 796 FunFam Serine/threonine-protein kinase-like protein CCR4 568 790 - -
Vimu1g00908 796 MobiDBLite consensus disorder prediction 421 471 - -
Vimu1g00908 796 FunFam serine/threonine-protein kinase-like protein CCR1 456 567 - -
Vimu1g00908 796 Gene3D - 190 310 IPR009091 -
Vimu1g00908 796 ProSitePatterns Serine/Threonine protein kinases active-site signature. 618 630 IPR008271 GO:0004672|GO:0006468
Vimu1g00908 796 Gene3D Transferase(Phosphotransferase) domain 1 568 785 - -
Vimu1g00908 796 Gene3D Phosphorylase Kinase; domain 1 448 567 - -
Vimu1g00908 796 Pfam Protein kinase domain 488 769 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00908 Vimu-Chr1 6335900 6338290 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g00908 7 796 Receptor kinase-like Gene Family AT3G55950 60.024 0.0 875
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Vimu1g00908 Pkinase 5e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00908 - - gmx:100798905 1304.27