Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00905 ATGGCTGTGTCCAACGGCGTCGAAGCAGTGTTAGAGTTTCTGCGGAAGAATGGCTTGTCGGAGGCGGAGTCCGCGCTCCGAGAAGACATCATCGAGAACACCGACCTCGGAAACTTCGACTACGAGAAGTTCTTCTTCCCCATGGTCCCGCCGCCGCCGCCGGTCAGAGTCCGATCCTTCTCCCGACGGTCCGAGCTCGCCGCCGCGGACGACGACTCCTCCAAATCCAGCTCGGACGAGTTCGTCACCATCGATTCTTCCACTTCTCGCGTCTCTTCTTCAGAATTCGTAAATCCTTATGGAATCCGTTCCTCGTCTCAGACTCAGAATGATTCGGAGTCTTCGTCTGAAAGATTATCTCAGTTTGGCACAGCACGTGATTATCACGATTTTGATATGCAAAATGAACCGTATTGGTATAATGAAAAGGATGAAGACTATTTCATGACTCCTAATTTTGAAGGGCCAGACTATTTTGCGTATCAGAGTGAAGATAAGTTTGTCATGACAGCAGAAACGGACAACCAACGGGACAATTCTCTGCATCTTGGTTCCAACTATGAAGAATTTCAATTAAAGGGGAATAGTAATGGTGGTTACATGGACAAGGCATGCCTTGATAATCATTCCTCTGTAGTGGATGGAACTGTGACTCATTCAAAAGGGTTTTGTCATATTGATAACAAGGACCAGTTTAAAGGGGAATTAGAGGGTAAGGCTGAGAAACCCAGTGTTTCCTGCAGTTGTGAAGTTCCATTTTGCAAAAGCAGTCCTGGTTCTGGAGGTTCTTGCAGTCTGGATCCTACAAACTTCAATTACCCTAACTTGAAGGAAATCCATCTGAACAATTTTCATTTGGGGGTTGTTGGGGACATTAACTCTTTTGATTCTACTTCAGAGCTAACTCTGAATCAAAGTTTTGACCACTACACTAAAAACGACAGCAGTAAGGAGTACAGGGGTCCTTACGACTTTACTATCGAAGTTACTGATAAAAATCTACCAAATGGACTTGACACCTATAAAGCACAACTTGGTGGAGAATTAACTGAAGACTGTCAAGATCCAGAGCTTGCTGCAGATGGAGAGGATACAACTGATGATGAGCTCTTGAAGTATACTCAAGAGGAAGAATACGAAGTGTTTGATCTGAGAATTATACATAGAAAGAACAGGACTGGATTTGAAGAAAACAAGGAACTTCCGATTGTGCTAAATACAGTTTTGGCTGGAAGGTATTATTTGACCGAGTATCTTGGTTCAGCTGCCTTCAGTAGGGTTGTTCAGGCACATGACCTTCAGACTGGGATAGATGTTTGTTTGAAGATTATTAAAAATGACAAAGACTTCTTTGATCAAAGCTTAGATGAAATCAAGCTTCTGAAACTTGTCAATAAGGGTGACCCAGCAGATAAACATCACATTTTGCGCCTGTATGACTATTTCTACCATCAGGAGCATTTATTCATTGTAACTGAACTTCTGCGAGCAAACTTGTATGAATTTCAGAAATTCAACCAAGAATCTGGAGGGGAAGCATATTTTACATTAAAGAGATTGCAGATCATTACTCGTCAGTGTTTGGAAGCATTGCAATACTTGCATGGCTTGGGAATTGTTCATTGTGACCTGAAGCCAGAAAACATTCTAATCAAAAGTTACAAAAGATGTGAGATAAAGGTTATTGATCTTGGAAGTAGTTGCTTCCAAACAGACAATCTGTGCCTATATGTACAGTCCAGATCCTATAGAGCTCCTGAAGTGATGTTAGGTCTTCAATATGATGAGAAGATTGATATATGGTCTCTCGGATGCATCTTGGCGGAGCTATGCTCTGGGGAAGTGCTGTTCCCAAATGATGCAGTTGTGATGATTCTGGCACGCATAATTGGAATGTTTGGTTCTATTGATATGGAAATGTTGGTAAAAGGACAAGAAACACACAAGTACTTCACCAAAGAATATGATATTTATTATATAAATGAGGTTTGTTTCCCCTATTTTTTCCTTTGCATAGCTATTCCTTTTTTTATCATATTTGAGACTGATCAACTGGAGTTCTTGATTCCAGAAGAATCATCATTGGAGCAGCACCTACAGGTTACTGATACTATGTTTATCAACTTTATCAGATACCTACTCAGCGTCAACCCTAAAAGAAGGCCTACTGCAAGACAAGCACTAAAGCATCCATGGCTTTCCTATGTTTACTAA 2214 0.4142 MAVSNGVEAVLEFLRKNGLSEAESALREDIIENTDLGNFDYEKFFFPMVPPPPPVRVRSFSRRSELAAADDDSSKSSSDEFVTIDSSTSRVSSSEFVNPYGIRSSSQTQNDSESSSERLSQFGTARDYHDFDMQNEPYWYNEKDEDYFMTPNFEGPDYFAYQSEDKFVMTAETDNQRDNSLHLGSNYEEFQLKGNSNGGYMDKACLDNHSSVVDGTVTHSKGFCHIDNKDQFKGELEGKAEKPSVSCSCEVPFCKSSPGSGGSCSLDPTNFNYPNLKEIHLNNFHLGVVGDINSFDSTSELTLNQSFDHYTKNDSSKEYRGPYDFTIEVTDKNLPNGLDTYKAQLGGELTEDCQDPELAADGEDTTDDELLKYTQEEEYEVFDLRIIHRKNRTGFEENKELPIVLNTVLAGRYYLTEYLGSAAFSRVVQAHDLQTGIDVCLKIIKNDKDFFDQSLDEIKLLKLVNKGDPADKHHILRLYDYFYHQEHLFIVTELLRANLYEFQKFNQESGGEAYFTLKRLQIITRQCLEALQYLHGLGIVHCDLKPENILIKSYKRCEIKVIDLGSSCFQTDNLCLYVQSRSYRAPEVMLGLQYDEKIDIWSLGCILAELCSGEVLFPNDAVVMILARIIGMFGSIDMEMLVKGQETHKYFTKEYDIYYINEVCFPYFFLCIAIPFFIIFETDQLEFLIPEESSLEQHLQVTDTMFINFIRYLLSVNPKRRPTARQALKHPWLSYVY 737
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00905 737 SUPERFAMILY Protein kinase-like (PK-like) 402 734 IPR011009 -
Vimu1g00905 737 Gene3D Phosphorylase Kinase; domain 1 389 491 - -
Vimu1g00905 737 ProSiteProfiles Protein kinase domain profile. 413 733 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g00905 737 FunFam Putative serine/threonine-protein kinase dyrk2 407 494 - -
Vimu1g00905 737 Pfam Protein kinase domain 416 733 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g00905 737 FunFam Serine/threonine-protein kinase ppk15 492 734 - -
Vimu1g00905 737 ProSitePatterns Serine/Threonine protein kinases active-site signature. 539 551 IPR008271 GO:0004672|GO:0006468
Vimu1g00905 737 SMART serkin_6 413 733 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g00905 737 PANTHER DUAL SPECIFICITY PROTEIN KINASE 109 733 - -
Vimu1g00905 737 CDD PKc_DYRK_like 413 733 - -
Vimu1g00905 737 Gene3D Transferase(Phosphotransferase) domain 1 492 734 - -
Vimu1g00905 737 MobiDBLite consensus disorder prediction 98 121 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00905 Vimu-Chr1 6307804 6312820 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g00905 410 728 MAP Kinase Gene Family AT5G19010 30.117 1.18e-31 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_DYRK-PRP4 Vimu1g00905 Pkinase 1.6e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00905 - - gmx:100783988 1239.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g00905 1 6307804 6312820 Vimu1g00905 1 6307804 6312820 ECH