Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00901 TTGCACCCAACATACACTTCTTCTACTCCTACTCCTTGTCTAATCCACTACTCAAAAGGAATTTGGGACATGTGTAGTGATTCAAAGAGTAAGCTTTCTTCTCCGAGCCTCGTGATGGAGAATAATCTTCAGAAGCAGAATCTTGACTGTTTCCGCAATTTCTCGGCTTTACTTGAACTGTCTGCTTGTGATGATTTTGAAGCTTTCAAAAGAGAAGTGGACGAGAAGGGCTTAGATGTCAGCGAGGCAGGGTTTTGGTATGGTAGAAGAATTGGGTCAAAGAAAATGGGATCTGAAAAGAGGACCCCTCTCATGATTGCTTCTTTGTTCGGAAGTATTAAGGTTCTCAAGTATATTCTTGAGGCAGAAACTGTTGATGTGAACAGGGCCTGTGGTTCTGATAGGGCCACTGCTCTTCATTGTGCTGTATCTGGAGGCTCTGAATCATCACCTGAGATTGTGAAGCTCTTGCTAGATGCTGGGGCTGATGCCGAATCCCTTGATGCTACTGGAAACAGGCCGGCTAATCTGATTGCTCCTGCCTTTGATTCTTCCTCCAAATCCCGGAGGAAGACCCTGGAGTTGCTCCTCAGTGGTGGTGAAAGAGATGAACTGGTGAGCCAGGAGGTGGAGCTGCAGATTTTCTCGGCTTCTTTATCAGCAAAAGAAGGCTCTGAGAAAAAAGAAGGAAGTGATAAGAAAGAGTATCCTGTTGATATATCTTTGCCTGATATAAACAACGGTGTGTATGGAACAGATGAGTTTAGGATGTACAGTTTCAAGGTGAAGCCTTGCTCAAGGGCCTACTCCCATGACTGGACTGAGTGTCCATTTGTTCATCCAGGCGAGAACGCAAGGAGGAGAGACCCAAGGAAATACCCTTATAGCTGTGTTCCATGCCCGGAATTCCGCAAAGGGACCTGCCAGAAGGCTGATTCCTGCGAGTATGCTCACGGTGTTTTCGAGTCCTGGCTACACCCTGCCCAGTACAGAACAAGGCTCTGCAAGGACGAGACTGGCTGCACCAGAAAAGTCTGCTTTTTTGCCCACAAACCTGAAGAGTTACGCCCTGTGTATGCTTCCACCGGGTCAGCTATGCCTTCACCAAAATCCTATTCATCCAGTGCACTAGACATGACATCCATGAGTCCATTGGCTCTCAGTTCCACATCTTTACCTATGCCAACTGTTTCAACCCCACCCATGTCTCCATTGGCAGCAGCTTCATCTCCAAAGAGTGGAAGCTTGTGGCAGAACAAAATAAACCTCACTCCACCATCACTTCAGCTCCCTGGTAGCAGACTCAAGGCTGCTCTCAGTGCCAGGGATCTGGAGATGGAGATGGAGCTGCTCGGTCTAGATAGTCCAGTTCGCCAACAACAGCAGCAGCAGCAGCAACAGTTGATAGAGGAGATTGCCAGGATCTCTTCTCCTTCTTTCCGCAACAAGGAATTCAACAGGATTGGTGATTTGAATCCAACCAACCTTGATAGCCTGTTAGCCTCTGCTGACCCTTCTGTGTTATCACAACTACATGGACTTTCTGTGCAGCCTTCAACACCCACCCAAACCGGGCTTCAGATGCGCCAGAACATGAACCACCTTCGTGCGAGTTATCCATCCAACATCCCCTCCTCTCCTGTGAGGAAGCCCTCAGCTTTTGGGTTTGACTCATCAGCTGCCGTGGCAGCTGCAGTGATGAACTCCAGGTCTGCCGCCTTCACCAAGCGAAGCCAAAGTTTCATCGATCGTGGTGCTTCGACCCACCATCTTGGCCTGTCTTCACCTTCCAACCCTTCCTGCAGGGTGTCCTCTACCCTCTCAGATTGGAGCTCCCCAACCGGGAAACTCGATTGGGGTGTCAACGGAGATGAGCTGAACAAGCTCAGGAAATCTGCTTCATTTGGGTTCAGAAACAATGGGGTAACTGCTTCCCCCATGGCTCAGCACGAACATGTTGAGCCAGATGTGTCTTGGGTTCATTCGTTGGTTAAGGATGTTCCTTCTGAGAGGTCGGAGATGTTTGGTGGTGAGAAGCAACAGTATGATCTGAGTAAAGAGATGCTGCCACCATGGGTGGAGCAGCTGTACATAGAGCAGGAGCAGATGGTGGCATGA 2118 0.4901 MHPTYTSSTPTPCLIHYSKGIWDMCSDSKSKLSSPSLVMENNLQKQNLDCFRNFSALLELSACDDFEAFKREVDEKGLDVSEAGFWYGRRIGSKKMGSEKRTPLMIASLFGSIKVLKYILEAETVDVNRACGSDRATALHCAVSGGSESSPEIVKLLLDAGADAESLDATGNRPANLIAPAFDSSSKSRRKTLELLLSGGERDELVSQEVELQIFSASLSAKEGSEKKEGSDKKEYPVDISLPDINNGVYGTDEFRMYSFKVKPCSRAYSHDWTECPFVHPGENARRRDPRKYPYSCVPCPEFRKGTCQKADSCEYAHGVFESWLHPAQYRTRLCKDETGCTRKVCFFAHKPEELRPVYASTGSAMPSPKSYSSSALDMTSMSPLALSSTSLPMPTVSTPPMSPLAAASSPKSGSLWQNKINLTPPSLQLPGSRLKAALSARDLEMEMELLGLDSPVRQQQQQQQQQLIEEIARISSPSFRNKEFNRIGDLNPTNLDSLLASADPSVLSQLHGLSVQPSTPTQTGLQMRQNMNHLRASYPSNIPSSPVRKPSAFGFDSSAAVAAAVMNSRSAAFTKRSQSFIDRGASTHHLGLSSPSNPSCRVSSTLSDWSSPTGKLDWGVNGDELNKLRKSASFGFRNNGVTASPMAQHEHVEPDVSWVHSLVKDVPSERSEMFGGEKQQYDLSKEMLPPWVEQLYIEQEQMVA 705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00901 705 ProSiteProfiles Ankyrin repeat profile. 134 169 IPR002110 GO:0005515
Vimu1g00901 705 SMART c3hfinal6 294 320 IPR000571 GO:0046872
Vimu1g00901 705 SMART c3hfinal6 329 352 IPR000571 GO:0046872
Vimu1g00901 705 Pfam Ankyrin repeats (3 copies) 97 165 IPR002110 GO:0005515
Vimu1g00901 705 ProSiteProfiles Zinc finger C3H1-type profile. 294 321 IPR000571 GO:0046872
Vimu1g00901 705 SMART ANK_2a 134 166 IPR002110 GO:0005515
Vimu1g00901 705 SMART ANK_2a 99 129 IPR002110 GO:0005515
Vimu1g00901 705 ProSiteProfiles Ankyrin repeat region circular profile. 134 168 - -
Vimu1g00901 705 FunFam Zinc finger CCCH domain-containing protein 66 252 320 - -
Vimu1g00901 705 SUPERFAMILY Ankyrin repeat 50 188 IPR036770 -
Vimu1g00901 705 PANTHER UNKEMPT FAMILY MEMBER 59 667 IPR045234 -
Vimu1g00901 705 Gene3D - 55 198 IPR036770 -
Vimu1g00901 705 Gene3D - 295 357 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00901 Vimu-Chr1 6243980 6246529 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g00901 54 700 C2H2 Transcription Factor Family AT5G12850 40.141 8.35e-147 442
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vimu1g00901 Ank_2 9.3e-09 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00901 - - gmx:100783376 1086.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g00901 1 6243980 6246529 Vimu1g00901 1 6243980 6246529 ECH