Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00898 ATGGAATTCTCTGTAAGAGCTGCGGAACTAACCACTCTATTAGAAAGTAGAATTACCAACTTTTACACAAATTTGAAAGTGGATGAGATCGGTCGAGTGGTCTCCGTTGGAGATGGGATTGCACGTGTTTATGGATTGAACGAGATTCAAGCTGGGGAAATGGTTGAATTTGCCAGCGGTGTGAAAGGAATAGCGTTGAATCTTGAGAATGAGAATGTCGGAATTGTGGTCTTTGGTAGTGATACCGCTATAAAAGAAGGAGATCTTGTCAAACGCACTGGATCTATTGTGGATGTTCCTGTGGGAAAGGCTATGCTAGGGCGTGTGGTCGACGCGTTGGGAGTACCTATTGATGGAAGAGGGGCTCTAAGCGATCACGAGCGAAGACGTGTCGAAGTGAAAGCCCCTGGTATTATTGAACGTAAATCTGTGCACGAGCCTATGCAAACAGGGTTAAAAGCGGTAGATAGCCTGGTTCCTATAGGCCGTGGTCAACGAGAACTTATAATCGGGGACCGACAAACTGGAAAAACAGCTATTGCTATCGATACCATATTAAATCAAAAGCAAATGAACTCAAGGGCCACCTCAGAGAGTGAGACATTGTATTGTGTCTATGTAGCGATTGGACAGAAACGCTCAACTGTGGCACAATTAGTTCAAATTCTTTCAGAAGCGAATGCTTTAGAATATTCCATTCTTGTAGCAGCCACCGCTTCGGATCCTGCACCTCTGCAATTTCTGGCCCCATATTCTGGGTGTGCCATGGGGGAATATTTCCGCGATAATGGAATGCACGCATTAATAATCTATGATGATCTTAGTAAACAGGTCGTGGCATATCGACAAATGTCATTATTGTTACGCCGACCACCAGGCCGTGAGGCTTTCCCAGACGATGTTTTCTATTTACATTCCCGTCTCTTAGAAAGAGCCGCTAAACGATCGGACCAGACAGGTGCAGGTAGCTTGACCGCCTTACCCGTCATTGAAACACAAGCGGGAGACGTATCGGCCTATATTCCAACCAATGTGATCTCCATTACTGATGGACAAATATGTTTGGAAACAGAGCTCTTTTATCGTGGAATTAGACCTGCTATTAACGTCGGCTTATCTGTCAGTCGCGTCGGGTCTGCCGCTCAGTTGAAAGCTATGAAACAAGTCTGCGATAGTTTAAAACTTGAATTGGCACAATATCGCGAAGTCGCCGCCTTTGCTCAATTTGGCTCAGACCTTGATGCTGCGACTCAGGCATTACTCAATAGAGGTGCAAGGCTTACAGAAGTACTGAAACAACCACAATATGCACCACTTCCAATTGAAAAACAAATTCTAGTCATTTATGCAGTTGTCAATGGATTCTGTGATAAAATGCCATTAGATCAAATTCCTCAATATGAAAGAGACATTCTAACTACTATTAAACCTGAATTACTACAATCACTAAAAGGTGGACTAACTAGCGAAATAAAAATAGAACTAGAAAAATTCTTCAAAGAAAAAGCAAAAAATTACAGTTTATGA 1527 0.4289 MEFSVRAAELTTLLESRITNFYTNLKVDEIGRVVSVGDGIARVYGLNEIQAGEMVEFASGVKGIALNLENENVGIVVFGSDTAIKEGDLVKRTGSIVDVPVGKAMLGRVVDALGVPIDGRGALSDHERRRVEVKAPGIIERKSVHEPMQTGLKAVDSLVPIGRGQRELIIGDRQTGKTAIAIDTILNQKQMNSRATSESETLYCVYVAIGQKRSTVAQLVQILSEANALEYSILVAATASDPAPLQFLAPYSGCAMGEYFRDNGMHALIIYDDLSKQVVAYRQMSLLLRRPPGREAFPDDVFYLHSRLLERAAKRSDQTGAGSLTALPVIETQAGDVSAYIPTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSAAQLKAMKQVCDSLKLELAQYREVAAFAQFGSDLDAATQALLNRGARLTEVLKQPQYAPLPIEKQILVIYAVVNGFCDKMPLDQIPQYERDILTTIKPELLQSLKGGLTSEIKIELEKFFKEKAKNYSL 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00898 508 PIRSF F_ATPase_subunit_alpha 3 507 IPR005294 GO:0015986|GO:0045261|GO:0046933
Vimu1g00898 508 FunFam ATP synthase subunit alpha 3 95 - -
Vimu1g00898 508 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 98 381 IPR027417 -
Vimu1g00898 508 Coils Coil 383 403 - -
Vimu1g00898 508 Gene3D - 4 95 IPR023366 -
Vimu1g00898 508 Pfam ATP synthase alpha/beta chain, C terminal domain 382 500 IPR000793 GO:0015986
Vimu1g00898 508 NCBIfam F0F1 ATP synthase subunit alpha 5 506 IPR005294 GO:0015986|GO:0045261|GO:0046933
Vimu1g00898 508 SUPERFAMILY C-terminal domain of alpha and beta subunits of F1 ATP synthase 384 504 - -
Vimu1g00898 508 SUPERFAMILY N-terminal domain of alpha and beta subunits of F1 ATP synthase 12 96 IPR036121 GO:0046034|GO:1902600
Vimu1g00898 508 Hamap ATP synthase subunit alpha [atpA]. 3 507 IPR005294 GO:0015986|GO:0045261|GO:0046933
Vimu1g00898 508 Pfam ATP synthase alpha/beta family, beta-barrel domain 27 94 IPR004100 GO:0046034|GO:1902600
Vimu1g00898 508 ProSitePatterns ATP synthase alpha and beta subunits signature. 366 375 IPR020003 GO:0005524
Vimu1g00898 508 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 151 375 IPR000194 GO:0005524
Vimu1g00898 508 CDD ATP-synt_F1_alpha_N 29 94 - -
Vimu1g00898 508 CDD ATP-synt_F1_alpha_C 386 506 IPR000793 GO:0015986
Vimu1g00898 508 CDD F1-ATPase_alpha_CD 96 378 IPR033732 GO:0032559
Vimu1g00898 508 Gene3D - 383 508 IPR038376 -
Vimu1g00898 508 Gene3D - 96 382 IPR027417 -
Vimu1g00898 508 PANTHER ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIAL 4 506 IPR005294 GO:0015986|GO:0045261|GO:0046933
Vimu1g00898 508 FunFam ATP synthase subunit alpha, mitochondrial 96 382 - -
Vimu1g00898 508 FunFam ATP synthase subunit alpha 383 507 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00898 Vimu-Chr1 6209173 6210699 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g00898 62 381 Primary Pumps ATPases(2) AT4G38510 26.140 2.85e-24 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00898 K02132 - gmx:15308608 938.717