Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00897 ATGACGTTCAAGCGCAGGAACGGAGGTCGCAACAAGCACGGTCGTGGCCACGTCAAATTCATTCGTTGCTCCAACTGCGGCAAATGCTGTCCTAAGGACAAGGCAATCAAGAGGTTTCTCGTGAGGAACATTGTTGAACAGGCTGCAGTCAGAGATGTGCAGGAGGCTTGTGTCTATGAGCAATACACGCTTCCCAAACTGTATGTGAAGATGCAGTACTGTGTTTCGTGTGCTATCCACTCTCATGTTGTTAGGGTTAGATCCCGCACTGACAGGAGGAAGCGTGAGCCTCCGCAGCGATTCATCAGGCGCAGGGATGATGCACCAAGGCCTGGTCAGCCTGGTCAAGCACCTCGTCCTCCTGTTGCAGGTGCTCCTGTCCGAACCTAA 390 0.5308 MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYEQYTLPKLYVKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRRDDAPRPGQPGQAPRPPVAGAPVRT 129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00897 129 FunFam 40S ribosomal protein S26 1 114 - -
Vimu1g00897 129 MobiDBLite consensus disorder prediction 86 129 - -
Vimu1g00897 129 ProSitePatterns Ribosomal protein S26e signature. 73 80 IPR000892 GO:0003735|GO:0005840|GO:0006412
Vimu1g00897 129 Pfam Ribosomal protein S26e 1 106 IPR000892 GO:0003735|GO:0005840|GO:0006412
Vimu1g00897 129 Gene3D Ribosomal protein S26e 1 114 IPR038551 -
Vimu1g00897 129 PANTHER 40S RIBOSOMAL PROTEIN S26 1 121 IPR000892 GO:0003735|GO:0005840|GO:0006412
Vimu1g00897 129 MobiDBLite consensus disorder prediction 90 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00897 Vimu-Chr1 6188975 6191612 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g00897 1 116 Cytoplasmic Ribosomal Protein Gene Family AT2G40590 84.483 1.23e-69 203