Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00890 ATGGAAAGTTACCACTATTCTTCTGGGTGGCCTCTTGCCACCAACATGGCTCAGTGCAACAACTCTGCACTAAACAGTGATCAATTATCTCCTTTTTCAGTTCCAACAACTCAAACACCCCCTCTTGCTTCTGACCCTCCATCTCTTCAGTTTACTGAGTTCCCTTTGTGGCCTGCATCCATTGCAGAAGATAGAGTTGCAAGTGCTTCAAAGAGTCACAGCCAAGCAGAGAAAAGGCGCAGAGATAGAATCAATGCACAGCTTGCAACTCTCAGAAAACTCATTCCCAAGTCTGATAAGATGGACAAAGCAGCGTTACTAGGGAGTGTGGTAGAGCATGTGAAAGATCTAAAGCGAAAAGCTATGTGTGTGAGCAAAGCCATCACTGTTCCAAGTGAAAGTGATGAAGTAACAATTGACTTCCATGAAGGTGAAGATGAAAGCTACAAAAAAGTGAAGAAATTGAAAGAGAAGATGATAATCAAAGCTTCAGTATGCTGTGATGATCGACCTGAAGTGTTTCCTGAGCTGATAAAAGTTCTAAAAGGGTTGAGACTGACAGCAGTTAAGGCTGACATAGCTAGTGTTGGTGGCAGAATGAAAAGCATATTGGTTCTTTGTTCAAAGGACAGTGAAGAGAACAGTGTTTGCCTCACCACTCTCAAACAATCACTTAAATCAGCTGTCAACAAAATTTCTTCGTTATCTGTTGCCACTAATTGTCCCACCAGAAGTAAGAGGCAGAGGTTCTTCTTCCCTTCACATTACGTACAACCATAA 780 0.4218 MESYHYSSGWPLATNMAQCNNSALNSDQLSPFSVPTTQTPPLASDPPSLQFTEFPLWPASIAEDRVASASKSHSQAEKRRRDRINAQLATLRKLIPKSDKMDKAALLGSVVEHVKDLKRKAMCVSKAITVPSESDEVTIDFHEGEDESYKKVKKLKEKMIIKASVCCDDRPEVFPELIKVLKGLRLTAVKADIASVGGRMKSILVLCSKDSEENSVCLTTLKQSLKSAVNKISSLSVATNCPTRSKRQRFFFPSHYVQP 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00890 259 Pfam Helix-loop-helix DNA-binding domain 71 117 IPR011598 GO:0046983
Vimu1g00890 259 PANTHER TRANSCRIPTION FACTOR BHLH30 60 254 IPR045847 GO:0003700|GO:0006355
Vimu1g00890 259 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 68 117 IPR011598 GO:0046983
Vimu1g00890 259 Gene3D - 62 124 IPR036638 GO:0046983
Vimu1g00890 259 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 71 121 IPR036638 GO:0046983
Vimu1g00890 259 CDD bHLH_AtAIG1_like 63 141 - -
Vimu1g00890 259 SMART finulus 74 123 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00890 Vimu-Chr1 6092687 6094048 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g00890 64 256 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G40200 47.500 1.31e-48 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vimu1g00890 HLH 6.4e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00890 - - gmx:100306102 385.185
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g00890 1 6092687 6094048 Vimu1g00890 1 6092687 6094048 ECH
Vimu6g01706 6 15604911 15606025 Vimu1g00890 1 6092687 6094048 PCT