Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00889 ATGACGGACGTTGGCAACGATCGAGTGAAGGGCTCGTGGAGTCCTCAGGAGGATGCGATATTACTGAAATTGGTGAAACAGTATGGCGCACGGAATTGGTCCCTCATCAGCAGCAGCATTCCGGGGCGTTCTGGCAAGTCCTGCCGCCTGCGATGGTGCAACCAGCTGAGCCCGGAGGTGCAGCACCGCCCCTTCACTTCGGCGGAGGACCAGATCATCATCAAGGCGCACGCTATTCACGGGAACAAGTGGGCCACCATCTCGCGCCTCCTCCCTGGCCGCACAGACAACGCCATTAAAAACCACTGGAACTCCACCCTCCGGCGCCGTAGCACGATGAGTCAGTCGTTGTCGGCGGCATCGCCAAACACCAAGCGCGCCTCTCCGTTGGATTGGGACAATCCTTCCAAGAAGCAGCGAATTGCGATTCCCGTTATCACACCTTTGAGTCTTTTTCCTTCCGGTGAAAAATCAGATGGAGAAGTGGAGGAGGAAGAGAAAAGAGTGGGAGAAGAGTTTAAAGTGAACAATAATAATATCAAGATTTTGAATCAGGACTACTTTCTGCAGGTCATGCGGCGCATGATTGCTGATGAGGTTAGAAATTACCTTCGTAGTTTGTGTAAGGGAAGGGAATATGTTCATCCAAATCTTCACAAATAA 663 0.5189 MTDVGNDRVKGSWSPQEDAILLKLVKQYGARNWSLISSSIPGRSGKSCRLRWCNQLSPEVQHRPFTSAEDQIIIKAHAIHGNKWATISRLLPGRTDNAIKNHWNSTLRRRSTMSQSLSAASPNTKRASPLDWDNPSKKQRIAIPVITPLSLFPSGEKSDGEVEEEEKRVGEEFKVNNNNIKILNQDYFLQVMRRMIADEVRNYLRSLCKGREYVHPNLHK 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00889 220 Gene3D - 9 61 - -
Vimu1g00889 220 MobiDBLite consensus disorder prediction 110 134 - -
Vimu1g00889 220 Gene3D - 63 133 - -
Vimu1g00889 220 Pfam Myb-like DNA-binding domain 13 71 - -
Vimu1g00889 220 PANTHER MYB PROTEIN-RELATED 10 127 - -
Vimu1g00889 220 ProSiteProfiles Myb-like domain profile. 5 56 IPR001005 -
Vimu1g00889 220 FunFam MYB transcription factor 10 61 - -
Vimu1g00889 220 CDD SANT 64 107 IPR001005 -
Vimu1g00889 220 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 111 IPR017930 -
Vimu1g00889 220 ProSiteProfiles Myb-like domain profile. 57 107 IPR001005 -
Vimu1g00889 220 SMART sant 61 109 IPR001005 -
Vimu1g00889 220 SMART sant 9 58 IPR001005 -
Vimu1g00889 220 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 5 60 IPR017930 -
Vimu1g00889 220 SUPERFAMILY Homeodomain-like 7 103 IPR009057 -
Vimu1g00889 220 MobiDBLite consensus disorder prediction 110 130 - -
Vimu1g00889 220 CDD SANT 12 54 IPR001005 -
Vimu1g00889 220 FunFam Transcription factor MYB44 64 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00889 Vimu-Chr1 6081058 6081720 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g00889 7 174 MYB Transcription Factor Family AT4G37260 52.381 3.28e-55 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vimu1g00889 Myb_DNA-bind_6 3.9e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00889 - - vra:106763298 389.423
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g00889 1 6081058 6081720 Vimu1g00889 1 6081058 6081720 ECH