Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00888 ATGTCGATTCGCGATACCGAATCCTTCAATTGGCACAGCGACGCGGAGCTCGAAGACCAGGACCTCCATATCCGCGGCCAGAAGCTCTTCTTCATCATCGTCGTTTTCTCGATCGTCCTCCTCTTCACCGCGCTCTTCCTCTTCGCACGACGGATCTGCCGCCACCACGGCCTCCTCTTCGACGCCGTTCCACCGCACCAGGCGCCGCCGACGCTTCCTTCTCAGGACGACGGCCTCGACGCCGACGCGATCAAGCGGCTACCGATCATCCTGCACCAGCGCGTGGCGGCGGAGGAGACGGAGTGCTGCATCTGCCTCGGCGCTTTCGTAGACGGCGCGAAGCTGAAGGTTCTCCCTGGTTGCGAGCACAGCTTCCACAGCGAGTGCGTGGACAAGTGGCTCGCGAATCACTCCAATTGCCCTCTCTGCAGAGCTTCGCTGAAACTCAATCCTTCGTTACCGAGGATTTTGATCCAATCGCCACCTGTTAGAACAACGCTTCCTCTCTGA 510 0.598 MSIRDTESFNWHSDAELEDQDLHIRGQKLFFIIVVFSIVLLFTALFLFARRICRHHGLLFDAVPPHQAPPTLPSQDDGLDADAIKRLPIILHQRVAAEETECCICLGAFVDGAKLKVLPGCEHSFHSECVDKWLANHSNCPLCRASLKLNPSLPRILIQSPPVRTTLPL 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00888 169 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 69 149 IPR013083 -
Vimu1g00888 169 ProSiteProfiles Zinc finger RING-type profile. 102 144 IPR001841 -
Vimu1g00888 169 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 29 150 - -
Vimu1g00888 169 SUPERFAMILY RING/U-box 88 151 - -
Vimu1g00888 169 SMART ring_2 102 143 IPR001841 -
Vimu1g00888 169 Pfam Ring finger domain 101 144 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00888 Vimu-Chr1 6060368 6060877 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g00888 11 152 C3H Transcription Factor Family AT3G11110 41.497 1.34e-29 104
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00888 - - gmx:100794554 257.684
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01704 6 15595953 15598670 Vimu1g00888 1 6060368 6060877 PCT