Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00887 ATGGCCTCTCTCCAACCTCAGCCCCAAGAAACCAAACCCACCGTCACCACCGCCACACCCTCCACTCCCACCCAGACATCTATCACCTCCAATGACACCACCACCAACAATACTACTGCTCGAAAATGCAAAGGCAAAGGTGGCCCCGACAACAACAAATTTAGGTACCGCGGCGTCAGACAACGAAGCTGGGGCAAATGGGTCGCCGAGATCCGCGAGCCACGTAAGCGCACGCGCAAGTGGCTCGGCACCTTCGCCACCGCAGAAGATGCCGCCAGAGCCTACGACCGTGCCGCCCTCATCCTCTATGGCTCCCGTGCCCAGCTTAATCTTCAATCCTCCGGTTCCTCTTCTCACTCTTCCTCCTCTCGTACCACCTCTTCCTCTTCCACTCAAACCCTAAGACCCTTGCTTCCTCGCCCCTCAGGCTTTGCTTTCAATTTTCCCTTTCACGCCGCCGCCCTTCCCTACCCTTATGTCACCACCTTCAATTACACCCCGCAGGCGCTGTGTCCTAATGAGAATAGTAATAACACAGTGCATGCTCATCATCATCACCATTACCATCACCATCACCATCACCGTCCTGAGGAAGTGGTGCAAGTGCCACATGCTCTATCAACATCATGTCCAAAGTCGGAATCCGATGTGAGTTTAGGTGGGGATAATACCACTGTTAATAGCTCCAGTAGATCAACCTCGTACCAAAGGCATGGTTCCGAGGATAAAAAACCCGTGCATGTGCTACATGATGATTCTTCGAATCATCAGCAACATCAGAACGGCGATGCGGATGGAGTTAATTCCGTTGTGGGTTCTGCGGAGGGTTCTCAGGCAAATATGGAGGCTTCCGAGGATCCCGATCTGTCGTTGGTGGGGACAGTGGGGCTTGGATCTTCTTCGACCCTGTGGCCTTTGGCGAATGAGGATGATTACACTGATAATTTGTGGGATTATAATGATCCTTTCTTCTTTGATCTTTAG 984 0.5224 MASLQPQPQETKPTVTTATPSTPTQTSITSNDTTTNNTTARKCKGKGGPDNNKFRYRGVRQRSWGKWVAEIREPRKRTRKWLGTFATAEDAARAYDRAALILYGSRAQLNLQSSGSSSHSSSSRTTSSSSTQTLRPLLPRPSGFAFNFPFHAAALPYPYVTTFNYTPQALCPNENSNNTVHAHHHHHYHHHHHHRPEEVVQVPHALSTSCPKSESDVSLGGDNTTVNSSSRSTSYQRHGSEDKKPVHVLHDDSSNHQQHQNGDADGVNSVVGSAEGSQANMEASEDPDLSLVGTVGLGSSSTLWPLANEDDYTDNLWDYNDPFFFDL 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00887 327 MobiDBLite consensus disorder prediction 1 42 - -
Vimu1g00887 327 FunFam Ethylene-responsive transcription factor 2 55 113 - -
Vimu1g00887 327 MobiDBLite consensus disorder prediction 111 136 - -
Vimu1g00887 327 Pfam AP2 domain 55 104 IPR001471 GO:0003700|GO:0006355
Vimu1g00887 327 PRINTS Ethylene responsive element binding protein signature 56 67 IPR001471 GO:0003700|GO:0006355
Vimu1g00887 327 PRINTS Ethylene responsive element binding protein signature 78 94 IPR001471 GO:0003700|GO:0006355
Vimu1g00887 327 MobiDBLite consensus disorder prediction 206 235 - -
Vimu1g00887 327 MobiDBLite consensus disorder prediction 259 284 - -
Vimu1g00887 327 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 24 266 - -
Vimu1g00887 327 MobiDBLite consensus disorder prediction 176 290 - -
Vimu1g00887 327 CDD AP2 55 112 IPR001471 GO:0003700|GO:0006355
Vimu1g00887 327 ProSiteProfiles AP2/ERF domain profile. 55 112 IPR001471 GO:0003700|GO:0006355
Vimu1g00887 327 SUPERFAMILY DNA-binding domain 55 112 IPR016177 GO:0003677
Vimu1g00887 327 SMART rav1_2 55 118 IPR001471 GO:0003700|GO:0006355
Vimu1g00887 327 MobiDBLite consensus disorder prediction 1 57 - -
Vimu1g00887 327 MobiDBLite consensus disorder prediction 236 258 - -
Vimu1g00887 327 Gene3D AP2/ERF domain 54 113 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00887 Vimu-Chr1 6045133 6046116 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g00887 41 327 AP2-EREBP Transcription Factor Family AT2G40220 41.875 5.49e-41 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vimu1g00887 AP2 6.8e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00887 K09286 - gmx:100779779 323.553
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g00887 1 6045133 6046116 Vimu1g00887 1 6045133 6046116 ECH