Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00884 ATGGGAACTTCCGTGCGTGTAAAAGAAGCATCGGTGATTACACCTTCTGAGCCCACTCCACGCTGCGTGCTCGCTCTATCAGCGCTTGATTCGCAACTCTTCCTTCGTTTCACCATAGAGTATCTGTTAGTCTACAAGCCCTCCCCTGGGCTGGACCAGCCTAACACCACGGCCCGTCTAAAATCGGCATTAGCCAGAGCCCTGGTTCCCTACTACCCCTTCGCGGGCAGGGTTAGGCCCAAGCCCGAAGGCCCGGGCCTGGAGGTGGTGTGTGCGGCCCAAGGCGCCGTGTTCATAGAAGCCTTCGCTGTCCGTTACAAGGCCAACGACTTTGAAAAAGCGCCTAAATCAGTTACGCAATGGAGGCCGTTGTTGTCGCTCCACGTGGCAGACGTGCTCAAGGGATCCCCGCCGCTGGTGGTTCAGCTGACCTGGCTCGTCGACGGCGCCGCCGCTATAGCCATCGGGATCAACCACTGCCTCTGCGACGGCATCGGCAGCGGGGAGTTTCTCAACCACTTCGCCGAGTTGGCTAACGAGAGACGCGAGACGAGTTACATGCGCATCCAGAAACCGGTTTGGGAGCGTCACCTTCTGAAACCACCGCGCGGGGAGGAGAGGCGGGTGGATTCAGCCAGTCATCCCGAGTTTAGCCGAGTCCCGGACCTATGCAGCTTCATGAACAAGGTCTCGACCGGGCTAAAACCAACGTCGATTACGTTCGACAAGACGCGGCTGAACGAGCTAAAGCGAGTGGCGCAGTGCACGAGCGAAGACGGCGAGGCGGCGCGGTACACTTCGTTCGAGGTACTGGCGGCGCACGTGTGGAGAAGCTGGGCGAGAGCGATAGGGTTTCCGGGGAACCAGAAACTAAAGCTGGTTTTCAGTATAAACGTGCGGAACCGTTTGAAGCCGGGTTTGCCGGAAGGATATTACGGGAACGCGTTTGTTTTGGGGTGTGCGGAGACGAGTGCGAGTGAGTTAGAAGAGAAAGGGGTGGGGTTCGGGTCGGGTTTGGTGAAGCGGGCGAAGGAGAGGGTGGGGAAAGAGCACGTGAGGGAGGTGATGGAGTGGGTGTGGGAGAGGAAAGGGTGCCCCGACCCGGTTGGGGTGTTGATAGTGTCACAGTGGTCGAGGCTAGGGTTGGAGAATATTGACGTGGGTTTGGGAAAGGCTTGGCACGTGGGACCCGTGTGCTGCGATAGGTACTGTTTGTTCTTGCCGGTGAGAGATGAGTGTGTTAGTGTGAAGGTCATGGTCGCTGTCCCCACTTCCGCCGTTGACAATTACAACCTTTTCATGCATTCCTCTCACCTCTGA 1320 0.5788 MGTSVRVKEASVITPSEPTPRCVLALSALDSQLFLRFTIEYLLVYKPSPGLDQPNTTARLKSALARALVPYYPFAGRVRPKPEGPGLEVVCAAQGAVFIEAFAVRYKANDFEKAPKSVTQWRPLLSLHVADVLKGSPPLVVQLTWLVDGAAAIAIGINHCLCDGIGSGEFLNHFAELANERRETSYMRIQKPVWERHLLKPPRGEERRVDSASHPEFSRVPDLCSFMNKVSTGLKPTSITFDKTRLNELKRVAQCTSEDGEAARYTSFEVLAAHVWRSWARAIGFPGNQKLKLVFSINVRNRLKPGLPEGYYGNAFVLGCAETSASELEEKGVGFGSGLVKRAKERVGKEHVREVMEWVWERKGCPDPVGVLIVSQWSRLGLENIDVGLGKAWHVGPVCCDRYCLFLPVRDECVSVKVMVAVPTSAVDNYNLFMHSSHL 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00884 439 PANTHER ACYL TRANSFERASE 4 3 430 - -
Vimu1g00884 439 Gene3D - 1 218 IPR023213 -
Vimu1g00884 439 Gene3D - 227 432 IPR023213 -
Vimu1g00884 439 Pfam Transferase family 4 426 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00884 Vimu-Chr1 6030427 6031746 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g00884 5 434 Monolignol Biosynthesis Gene Families AT5G48930 24.775 1.15e-42 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00884 - - gmx:100817048 751.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g00884 1 6030427 6031746 Vimu1g00884 1 6030427 6031746 ECH
Vimu6g01702 6 15577346 15579687 Vimu1g00884 1 6030427 6031746 PCT