Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00882 ATGAAGGGTTACGAGCCACGTTCGAGTTCTTCTTGTGCAGCCTGCAAGTTCTTGAAGCGAAGATGCATACCCAATTGTATATTTGCACCTTACTTTCGTTCTGATGAGTGCAAGAAATTTGCCAAGGTGCACAAGGTTTTTGGAGCCAGCAATGTCAGCAAGATCCTCATCGAAGTTCCCGAGGAGCAGAGAGAGGACACCGTCAATTCTCTTGCTTATGAAGCAGAAGCCAGGCTCAGAGATCCCATTTATGGATGTATCGGTGCCATAGCTCTTCTCCAGAGGAAGATGCTCGAGCTTCAACATGACCTTGCCATTGCTAAGGATCGTCTCGCTCGTTATGCTGCCGCTGCGACCACTCCTTCCGCCGCCATCGCCACCTCCAACAACACCTTCAATTCCCATGTTAGTTTGCCACCCTTCCCTGAATTTTTCTCTTGCAACGATTTCAGTGACAACTTCTGCCACAACTCTTCCTCTCAATCTCCGCCATTTACCAGACACGAAATGGTCGATGATTTCATTCAAATCCCTTATATATTATGA 546 0.4725 MKGYEPRSSSSCAACKFLKRRCIPNCIFAPYFRSDECKKFAKVHKVFGASNVSKILIEVPEEQREDTVNSLAYEAEARLRDPIYGCIGAIALLQRKMLELQHDLAIAKDRLARYAAAATTPSAAIATSNNTFNSHVSLPPFPEFFSCNDFSDNFCHNSSSQSPPFTRHEMVDDFIQIPYIL 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00882 181 Coils Coil 90 110 - -
Vimu1g00882 181 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 9 128 - -
Vimu1g00882 181 ProSiteProfiles LOB domain profile. 10 111 IPR004883 -
Vimu1g00882 181 Pfam Lateral organ boundaries (LOB) domain 11 108 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00882 Vimu-Chr1 6023732 6024277 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g00882 1 166 AS2 family AT3G11090 57.229 1.84e-64 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vimu1g00882 LOB 1.7e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00882 - - gmx:100777635 290.812
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g00882 1 6023732 6024277 Vimu1g00882 1 6023732 6024277 ECH