Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00881 ATGAACGATGTTCTATCTGCTATGATGGTCTCCCAAGGCTTGTTACCATCTGGGTCTCTGCTAGATTCTTTGATTCATATATCCAAAGAAGTTGACTCAATGGAAAAGTTTCCCTTCGTACACATAAGAAACGTTTCATCCATGATCAGAAGGGTCAAGCTTCTTTCTTCTTTGTTTGAAGAGATTAAAGAATCGGGTACTCCACTTCCTCCTTCTTCAATCCTGTGTCTCACAGAACTGTTCTCTGTGATAAGAAGAGTTAAGGTTTTGATCCAAGACTGCAAAGATGGAAGCTCTCTTTGGAGTCTGATACAGTTAGAGTTCATTTCCAACCAATTTTATGTGCTGGTGAAGGAGATGGGAAGGGCCCTTGATATTCTTCCTTTGAGTTTGCTCAATGTAACATCAGATATTAGGGAACAGGTGGAGCTTCTTCACAAGCAAGCAAAGAAGGCTGAGTTATTCATTGATCCTAGAGAGCTTCATCGAAGAGAGCAACTTAAAGTAGCAATGGCCAACAACAGTTTACAAAAGAAGAAGAACAAAGGGTTTGTTGACTTTGCAAAAGTGGAAGAAATACTGAGCAGCATTGGTCTTAGAACCCCATCAGATTATGATGGAGAAATATCAAAGTTAGAGGCTGAAGCTCAGAACCAAGCTGGCACAGGAGGACTCATCATTGTCTCCAATATAAACAACCTCATATCGTTGGTGTCTTATTCGAAAACCATGATATTCAGAGATGGAGAGAGTAGTAGAAATGAAGAAGATTGTAAGCCACTGTCTTCATTTTTGTATAACAAAGTTCATGATAGTTCTTCATCCTCTCAGTCCATGACACCTAATGTTCCTGATGAATTTCGTTGTCCAATAACACTTGATTTAATGAGGGACCCCGTGATTGTGTCATCTGGGCACACATATGATAGAACATCGATTGGACAATGGATAAACTCTGGTCATCATACATGCCCCAAAAGTGGGCAAAGGTTAATTCACACTGCTTTAATACCCAACTATGCATTGAAGAGCCTTGTTCAGCAATGGTGCTATGACAACAATGTCCCAGTTAATGAGCCTTCAACCGAGGGAAACAACCACAAGAAGAAGAACTCGAAGGAGGAGGCCATCGACCATATTTCTGCAAACAAAGCTGCTGCAGATGCTGTCAAAATGACAGCAGAATTTCTTGTTGGAAAATTGGCAACTGGTTCTGCTGATATCCAAAGGCAAGCTGCATATGAACTTCGGTTACTTGCAAAAACCGGCATGGTCAACCGGAGTGTCATAGCTGAAGTAGGGGCCATTCCCTTTCTCGTAACACTTCTAGGATCTCAAGATTCAAGAATTCAAGAGCATGCAGTGACAACCTTGTTCAACCTCTCCATATTTGACAACAACAAGATTTTGATCATGGCAGCAGGAGCAGTTGATAGCATAGTAGAAGTACTCGAATCAGGGAAGACCATGGAGGCAAGGGAGAATGCAGCAGCAGCAATATACAGCTTGTCTATGGTGGATGAGCTGAAAGTGCATATTGGAGGAAGACCAAGAGCAATACCTGCTTTAGTTAGACTCTTGAAAGAAGGCACTTCAATAGGGAAAAAAGATGCTGCATCTGCACTGTTCAATCTTGCAGTTTACAATCCTAACAAAGTTAGTGCTGTTAAGGGTGGTGCAGTTGCTGTGCTGGTAGAATTGCTGATGGATGACAAGGCTGGCATAACAGATGATGCACTTTCAGTGCTTGCTTCACTCCTTGGTTGCTCTGAGGGATTGGAAGAGATAAGAAATAGTAGAGCATTGGTGCCACTTCTTATTGATCTTCTGAGATTTGGATCAGTGAAAGGGAAGGAAAATTCAATAACCCTTTTGCTTGGACTGTGCAAAGAAGAGGGAGAAGTGGTTGCAAGAAGACTCTTGGCAAATCCAAGAAGCATTCCTTCTCTTCAAAGCTTGGCTTCTGATGGATCTTTGAGAGCTAGAAGAAAAGCAGATGCACTGCTCAGACTCCTCAATAGGTGCTGCTCTCAGCCTCATCATTCTGTTTGA 2052 0.4201 MNDVLSAMMVSQGLLPSGSLLDSLIHISKEVDSMEKFPFVHIRNVSSMIRRVKLLSSLFEEIKESGTPLPPSSILCLTELFSVIRRVKVLIQDCKDGSSLWSLIQLEFISNQFYVLVKEMGRALDILPLSLLNVTSDIREQVELLHKQAKKAELFIDPRELHRREQLKVAMANNSLQKKKNKGFVDFAKVEEILSSIGLRTPSDYDGEISKLEAEAQNQAGTGGLIIVSNINNLISLVSYSKTMIFRDGESSRNEEDCKPLSSFLYNKVHDSSSSSQSMTPNVPDEFRCPITLDLMRDPVIVSSGHTYDRTSIGQWINSGHHTCPKSGQRLIHTALIPNYALKSLVQQWCYDNNVPVNEPSTEGNNHKKKNSKEEAIDHISANKAAADAVKMTAEFLVGKLATGSADIQRQAAYELRLLAKTGMVNRSVIAEVGAIPFLVTLLGSQDSRIQEHAVTTLFNLSIFDNNKILIMAAGAVDSIVEVLESGKTMEARENAAAAIYSLSMVDELKVHIGGRPRAIPALVRLLKEGTSIGKKDAASALFNLAVYNPNKVSAVKGGAVAVLVELLMDDKAGITDDALSVLASLLGCSEGLEEIRNSRALVPLLIDLLRFGSVKGKENSITLLLGLCKEEGEVVARRLLANPRSIPSLQSLASDGSLRARRKADALLRLLNRCCSQPHHSV 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00881 683 Pfam U-box domain 283 353 IPR003613 GO:0004842|GO:0016567
Vimu1g00881 683 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 518 560 IPR000225 GO:0005515
Vimu1g00881 683 FunFam RING-type E3 ubiquitin transferase 489 676 - -
Vimu1g00881 683 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 282 357 IPR013083 -
Vimu1g00881 683 CDD RING-Ubox_PUB 284 336 IPR045210 -
Vimu1g00881 683 ProSiteProfiles U-box domain profile. 282 356 IPR003613 GO:0004842|GO:0016567
Vimu1g00881 683 SUPERFAMILY RING/U-box 271 357 - -
Vimu1g00881 683 Gene3D - 514 675 IPR011989 -
Vimu1g00881 683 PANTHER U BOX DOMAIN-CONTAINING 44 677 - -
Vimu1g00881 683 FunFam RING-type E3 ubiquitin transferase 282 356 - -
Vimu1g00881 683 SMART Ubox_2 286 349 IPR003613 GO:0004842|GO:0016567
Vimu1g00881 683 SUPERFAMILY ARM repeat 394 672 IPR016024 -
Vimu1g00881 683 Gene3D - 365 513 IPR011989 -
Vimu1g00881 683 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 434 476 IPR000225 GO:0005515
Vimu1g00881 683 SMART arm_5 423 463 IPR000225 GO:0005515
Vimu1g00881 683 SMART arm_5 507 547 IPR000225 GO:0005515
Vimu1g00881 683 SMART arm_5 382 421 IPR000225 GO:0005515
Vimu1g00881 683 SMART arm_5 589 630 IPR000225 GO:0005515
Vimu1g00881 683 SMART arm_5 464 505 IPR000225 GO:0005515
Vimu1g00881 683 SMART arm_5 548 588 IPR000225 GO:0005515
Vimu1g00881 683 Pfam Armadillo/beta-catenin-like repeat 426 462 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00881 Vimu-Chr1 6012182 6014233 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g00881 18 678 U-box Gene Family AT3G46510 37.631 2.58e-124 382
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00881 - - gmx:100793498 1142.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g00881 1 6012182 6014233 Vimu1g00881 1 6012182 6014233 ECH