Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00878 ATGCTTTTGCTTCTTCCTTCTATATCTTCTTCAACTACATTTTTTTATTTTCTTAATACGTTTAATCTTTCCAAATTTGCTTCCTTTGACGCTTTTCTTGCAGCAAGAATGGAAAAGAACAGGAAACTCACCCGGTTGCAGGATCTTTGTATAGCTTCGCGCCTTGTGGCGGTTTTTTTCTTGTTTCAGAATTTGGGTTTCTGTTGTTCTTTGAATGAAGAAGGAATTTGGATGAGGCTTAAACGTGGTTTCTGTGTGCAGAGAATAGTGAGTGACCCTTTTGGTGCTTTGTCAAATTGGGTGGATGATGATTCATCTTTTGACCCTTGTAATTGGTTTGGAGTTCAGTGCTCAGATGGAAGAGTTGTGGCCTTGAATTTGAAGGATCTCTGCCTTGAAGGAACTCTGGCACCTGAGCTTGCTAAACTTATCCACATAAAGTCCATTATTTTACGGAACAACTCTTTCTCTGGGACAATCCCTGAAGGATTTGTGGAGTTAAAAGAATTGGAGGTTTTGGATTTGGGATACAACAACTTCAGTGGACATCTACCTGCTGATCTTGGGAGCAATATCTCACTAGCAATCCTCTTGTTGGATAACAATGAATTTCTTGTTGGTTTCTCTCCGGAAATCAATGAACTGAGGCTGCTTTCTGAGTGCCAAGTGGGTGAAAATCAGCTAACTAATGCTGCTAAAATGCCAGCGTGTATAGAAAGAGCCACCACATGGCATATTGGTCAAGGTAAAGGTACTACTCGTGGCCTACTGCAAAATCGAAAACCATTTCATCGTACTCATGAAGATCCTCGTAATCGTGCGGATAATCCACCACAAGAGAAGCCTTCACCGGTGCCAAAGCTAACTCCCACTGAGAAAAATGCTTCTAATTCTCCTACTCCACATTCTACACCAGGTTCTGGAGCACTACCTAAAACTGAAAAAAGCACTTCACCAAAGGTGGTTAATGTCAGACCTTGGGCCACGGGACTAAGTGGACAGCTGGAGAAGGCATTTAGTTCTACATTTTCAGGTGCTCAAAAGCTAAGGAGATTGAATCTTGAAGTAGCATGTGAAGATTTTAGTAATGTAATTGGTATTTCACCTATTGGCACAGTGTACAAAGGAACTTTGTCTAGTGGCGTCGAAATAGCTGTAATGTCTGTTCCGGTGACATCATCCAAGAATTGGTCAAAGACTTTAGAAGTTCAATTTAGAAACAAGATAGATACATTATCGAAAGTGAACCATAAGAATTTTGTAAATCTTATTGGATACTGTGAAGAGGAGGAGCCTTTCACCAGAATGTTGGTTTTTGAATATGCCCCAAATGGAACACTTTTTGAGCATTTACACATAAAAGAGGCTGAGCACTTGGATTGGGTAACAAGGCTTAGAGTTGCAACGGGTATGGCTTATTGCTTGCAGCATGTGCACCAATTGGACCCTCCTATGGCCCTTATCACGCTGAATTCTCAAACTGTTTACTTGACTGATGATTATGCTGCCAAACTCTCAGATTTTAGTTTCTCCTATGAAATAACCTCAGCTGAGACAAAAGCCATTGACATGCCAAAAGCAAGTCTAGAAACTAACGTTTATAGCTTTGGTGCTTTGTTATTTGAACTGGTTACTGGTCGTCTCCCTTATTCAGTGGAACAAAGGGACGACTCCCTTGAAAACTGGGCATCACACTATTTACAAGGAGACCAACCCCTCAAGGATATGGTGGATCCAATTCTTGAATCTTACCAAGAGGGTCAGCTTGAACAAGTTGCTGCATTGATTAAATCTTGTGTGCATCCAGATCCAAAGCAGAGACCAATAATGAAAGATGTCAGTGAGAAGCTAAGAGAGATAACAAAGATAACACCTGAATCAGCAGTTCCAAAACTTTCTCCACTTTGGTGGGCAGAGCTTGAGATTTCTTCTACAGAAGTGCGTTGA 1947 0.4104 MLLLLPSISSSTTFFYFLNTFNLSKFASFDAFLAARMEKNRKLTRLQDLCIASRLVAVFFLFQNLGFCCSLNEEGIWMRLKRGFCVQRIVSDPFGALSNWVDDDSSFDPCNWFGVQCSDGRVVALNLKDLCLEGTLAPELAKLIHIKSIILRNNSFSGTIPEGFVELKELEVLDLGYNNFSGHLPADLGSNISLAILLLDNNEFLVGFSPEINELRLLSECQVGENQLTNAAKMPACIERATTWHIGQGKGTTRGLLQNRKPFHRTHEDPRNRADNPPQEKPSPVPKLTPTEKNASNSPTPHSTPGSGALPKTEKSTSPKVVNVRPWATGLSGQLEKAFSSTFSGAQKLRRLNLEVACEDFSNVIGISPIGTVYKGTLSSGVEIAVMSVPVTSSKNWSKTLEVQFRNKIDTLSKVNHKNFVNLIGYCEEEEPFTRMLVFEYAPNGTLFEHLHIKEAEHLDWVTRLRVATGMAYCLQHVHQLDPPMALITLNSQTVYLTDDYAAKLSDFSFSYEITSAETKAIDMPKASLETNVYSFGALLFELVTGRLPYSVEQRDDSLENWASHYLQGDQPLKDMVDPILESYQEGQLEQVAALIKSCVHPDPKQRPIMKDVSEKLREITKITPESAVPKLSPLWWAELEISSTEVR 648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00878 648 Gene3D Phosphorylase Kinase; domain 1 334 441 - -
Vimu1g00878 648 Gene3D Ribonuclease Inhibitor 81 247 IPR032675 -
Vimu1g00878 648 ProSiteProfiles Protein kinase domain profile. 359 621 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g00878 648 Pfam Leucine rich repeat N-terminal domain 91 118 IPR013210 -
Vimu1g00878 648 Pfam Protein tyrosine and serine/threonine kinase 362 617 IPR001245 GO:0004672|GO:0006468
Vimu1g00878 648 Gene3D Transferase(Phosphotransferase) domain 1 442 629 - -
Vimu1g00878 648 PANTHER PROTEIN MALE DISCOVERER 2 318 646 - -
Vimu1g00878 648 MobiDBLite consensus disorder prediction 248 321 - -
Vimu1g00878 648 MobiDBLite consensus disorder prediction 289 321 - -
Vimu1g00878 648 MobiDBLite consensus disorder prediction 261 276 - -
Vimu1g00878 648 SUPERFAMILY L domain-like 87 231 - -
Vimu1g00878 648 FunFam Leucine-rich repeat receptor-like kinase 84 204 - -
Vimu1g00878 648 SUPERFAMILY Protein kinase-like (PK-like) 349 617 IPR011009 -
Vimu1g00878 648 FunFam Inactive receptor-like serine/threonine-protein kinase 330 441 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00878 Vimu-Chr1 6000533 6004836 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g00878 105 621 Receptor kinase-like Gene Family AT3G02880 27.152 3.06e-42 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-2 Vimu1g00878 PK_Tyr_Ser-Thr 6.1e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00878 - - gmx:100792450 927.161