Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00869 ATGGATGTTGTATCCATCCCAAAAACAAACGAGAATTTCCGCCTGCTCTATGATACCAAAGGTCGTTTCCGTCTTCATTCTATCAGGGATGATGAGGCAAAGTTCAAGCTCTGCAAGGTTAGGTCAGTGCAATTTGGCCAGAAAGGTATTCCATACCTGAACACTTATGATGGTCGTACCATCCGTTACCCAGATCCTCTCATCAGAGCCAATGACACCATTAAGCTGGATCTCGAGGAAAACAAGATCGTTGATTTTATCAAATTTGATGTCGGGAATGTTGTAATGGTTACTGGAGGAAGAAACAGGGGGCGTGTTGGAGTTATTAAGAACAGGGAGAAGCATAAGGGTAGCTTTGAGACAATTCACGTTCAGGACGCCACTGGACATGAATTTGCTACTCGTATGGGAAACGTGTTCACCATTGGCAAGGGGACAAAGCCATGGGTATCACTTCCCAAGGGTAAGGGTATTAAGCTATCCATCATTGAGGAAGCTAGAAAAAGGATTACCGCTCAGCAAGCAACTGCTGCTTGA 537 0.4469 MDVVSIPKTNENFRLLYDTKGRFRLHSIRDDEAKFKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIRANDTIKLDLEENKIVDFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATRMGNVFTIGKGTKPWVSLPKGKGIKLSIIEEARKRITAQQATAA 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00869 178 FunFam 40S ribosomal protein S4 36 86 - -
Vimu1g00869 178 Pfam KOW motif 91 124 IPR005824 -
Vimu1g00869 178 FunFam 40S ribosomal protein S4 89 159 - -
Vimu1g00869 178 PANTHER 30S/40S RIBOSOMAL PROTEIN S4 1 168 IPR000876 GO:0003735|GO:0005840|GO:0006412
Vimu1g00869 178 CDD KOW_RPS4 89 143 IPR041982 -
Vimu1g00869 178 Pfam 40S ribosomal protein S4 C-terminus 126 172 IPR032277 -
Vimu1g00869 178 Gene3D - 36 86 IPR038237 -
Vimu1g00869 178 Coils Coil 163 178 - -
Vimu1g00869 178 Gene3D - 89 159 IPR014722 -
Vimu1g00869 178 Gene3D - 1 31 IPR036986 GO:0003723
Vimu1g00869 178 SMART kow_9 88 115 IPR005824 -
Vimu1g00869 178 Pfam Ribosomal family S4e 9 83 IPR013845 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00869 Vimu-Chr1 5927205 5928526 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g00869 1 176 Cytoplasmic Ribosomal Protein Gene Family AT5G07090 91.477 2.00e-122 343
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00869 K02987 - gmx:100795220 334.724
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g00869 1 5927205 5928526 Vimu1g00869 1 5927205 5928526 ECH