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Gene search
Sequence information
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Gene
Cds
Cds_length
GC_content
Pep
Pep_length
Vimu1g00869
ATGGATGTTGTATCCATCCCAAAAACAAACGAGAATTTCCGCCTGCTCTATGATACCAAAGGTCGTTTCCGTCTTCATTCTATCAGGGATGATGAGGCAAAGTTCAAGCTCTGCAAGGTTAGGTCAGTGCAATTTGGCCAGAAAGGTATTCCATACCTGAACACTTATGATGGTCGTACCATCCGTTACCCAGATCCTCTCATCAGAGCCAATGACACCATTAAGCTGGATCTCGAGGAAAACAAGATCGTTGATTTTATCAAATTTGATGTCGGGAATGTTGTAATGGTTACTGGAGGAAGAAACAGGGGGCGTGTTGGAGTTATTAAGAACAGGGAGAAGCATAAGGGTAGCTTTGAGACAATTCACGTTCAGGACGCCACTGGACATGAATTTGCTACTCGTATGGGAAACGTGTTCACCATTGGCAAGGGGACAAAGCCATGGGTATCACTTCCCAAGGGTAAGGGTATTAAGCTATCCATCATTGAGGAAGCTAGAAAAAGGATTACCGCTCAGCAAGCAACTGCTGCTTGA
537
0.4469
MDVVSIPKTNENFRLLYDTKGRFRLHSIRDDEAKFKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIRANDTIKLDLEENKIVDFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATRMGNVFTIGKGTKPWVSLPKGKGIKLSIIEEARKRITAQQATAA
178
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Annotation information
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Seq ID
Length
Analysis
Description
Start
End
IPR
GO
Vimu1g00869
178
FunFam
40S ribosomal protein S4
36
86
-
-
Vimu1g00869
178
Pfam
KOW motif
91
124
IPR005824
-
Vimu1g00869
178
FunFam
40S ribosomal protein S4
89
159
-
-
Vimu1g00869
178
PANTHER
30S/40S RIBOSOMAL PROTEIN S4
1
168
IPR000876
GO:0003735|GO:0005840|GO:0006412
Vimu1g00869
178
CDD
KOW_RPS4
89
143
IPR041982
-
Vimu1g00869
178
Pfam
40S ribosomal protein S4 C-terminus
126
172
IPR032277
-
Vimu1g00869
178
Gene3D
-
36
86
IPR038237
-
Vimu1g00869
178
Coils
Coil
163
178
-
-
Vimu1g00869
178
Gene3D
-
89
159
IPR014722
-
Vimu1g00869
178
Gene3D
-
1
31
IPR036986
GO:0003723
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Duplication type information
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Gene
Chromosome
Start
End
Duplicated_type
Vimu1g00869
Vimu-Chr1
5927205
5928526
Dispersed
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Functional genes information
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Gene
Gene_start
Gene_end
Function
Ath_gene
Identity(%)
E-value
Score
Vimu1g00869
1
176
Cytoplasmic Ribosomal Protein Gene Family
AT5G07090
91.477
2.00e-122
343
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Pathway information
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Query
KO
Definition
Second KO
KEGG Genes ID
GHOSTX Score
Vimu1g00869
K02987
-
gmx:100795220
334.724
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Event-related genes
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Gene_1
Chr_1
Start_1
End_1
Gene_2
Chr_2
Start_2
End_2
Event_name
Vimu1g00869
1
5927205
5928526
Vimu1g00869
1
5927205
5928526
ECH
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