Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vimu1g00867 | ATGGGTGGAAATTCTCCTTGTGCCTCATGCAAATTGTTGAGACGCAGGTGCACAAAAGATTGCATCTTTGCTCCTTATTTTCCTTCTGATGAACCTCAAAAGTTTGCCATAGTTCACAAAGTTTTTGGTGCTAGCAATGTCAGCAAAATGTTGCAGGAACTTCCAGTTCAGCAGAGAGCAGATGCAGTGAGTAGTTTAGTGTATGAAGCAAGTGCAAGAGTGAGAGATCCTGTGTATGGTTGTGTTGGAGCCATATCCTATTTGCAAAATCAAGTTGCTGATCTTCAAATGCAACTTGCAGTTGCTCAAGCAGAAATACTCTGTATTCAGATGGAAAATGAATCACTGATACCACTCTCAGAAACTGATCTACACCAGAAGTCTTATCTTCTTCAGAATAATTTCTCTCAGTTACTTGATTTTAACACTTCCAACAGTGTAGTTCACTATTCTCCTAATCATCTTACACAATGA | 474 | 0.3924 | MGGNSPCASCKLLRRRCTKDCIFAPYFPSDEPQKFAIVHKVFGASNVSKMLQELPVQQRADAVSSLVYEASARVRDPVYGCVGAISYLQNQVADLQMQLAVAQAEILCIQMENESLIPLSETDLHQKSYLLQNNFSQLLDFNTSNSVVHYSPNHLTQ | 157 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vimu1g00867 | 157 | Coils | Coil | 85 | 105 | - | - | |
Vimu1g00867 | 157 | ProSiteProfiles | LOB domain profile. | 5 | 106 | IPR004883 | - | |
Vimu1g00867 | 157 | Pfam | Lateral organ boundaries (LOB) domain | 6 | 103 | IPR004883 | - | |
Vimu1g00867 | 157 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 4 | 125 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vimu1g00867 | Vimu-Chr1 | 5903732 | 5904443 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vimu1g00867 | 3 | 131 | AS2 family | AT2G30130 | 78.947 | 4.22e-72 | 213 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | LOB | Vimu1g00867 | LOB | 9.7e-43 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vimu1g00867 | - | - | gmx:100812780 | 252.292 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Vimu6g01691 | 6 | 15507685 | 15508425 | Vimu1g00867 | 1 | 5903732 | 5904443 | ECH | |
Vimu1g00867 | 1 | 5903732 | 5904443 | Vimu1g00867 | 1 | 5903732 | 5904443 | ECH | |
Vimu6g01691 | 6 | 15507685 | 15508425 | Vimu1g00867 | 1 | 5903732 | 5904443 | PCT |