Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00867 ATGGGTGGAAATTCTCCTTGTGCCTCATGCAAATTGTTGAGACGCAGGTGCACAAAAGATTGCATCTTTGCTCCTTATTTTCCTTCTGATGAACCTCAAAAGTTTGCCATAGTTCACAAAGTTTTTGGTGCTAGCAATGTCAGCAAAATGTTGCAGGAACTTCCAGTTCAGCAGAGAGCAGATGCAGTGAGTAGTTTAGTGTATGAAGCAAGTGCAAGAGTGAGAGATCCTGTGTATGGTTGTGTTGGAGCCATATCCTATTTGCAAAATCAAGTTGCTGATCTTCAAATGCAACTTGCAGTTGCTCAAGCAGAAATACTCTGTATTCAGATGGAAAATGAATCACTGATACCACTCTCAGAAACTGATCTACACCAGAAGTCTTATCTTCTTCAGAATAATTTCTCTCAGTTACTTGATTTTAACACTTCCAACAGTGTAGTTCACTATTCTCCTAATCATCTTACACAATGA 474 0.3924 MGGNSPCASCKLLRRRCTKDCIFAPYFPSDEPQKFAIVHKVFGASNVSKMLQELPVQQRADAVSSLVYEASARVRDPVYGCVGAISYLQNQVADLQMQLAVAQAEILCIQMENESLIPLSETDLHQKSYLLQNNFSQLLDFNTSNSVVHYSPNHLTQ 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00867 157 Coils Coil 85 105 - -
Vimu1g00867 157 ProSiteProfiles LOB domain profile. 5 106 IPR004883 -
Vimu1g00867 157 Pfam Lateral organ boundaries (LOB) domain 6 103 IPR004883 -
Vimu1g00867 157 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 4 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00867 Vimu-Chr1 5903732 5904443 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g00867 3 131 AS2 family AT2G30130 78.947 4.22e-72 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vimu1g00867 LOB 9.7e-43 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00867 - - gmx:100812780 252.292
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01691 6 15507685 15508425 Vimu1g00867 1 5903732 5904443 ECH
Vimu1g00867 1 5903732 5904443 Vimu1g00867 1 5903732 5904443 ECH
Vimu6g01691 6 15507685 15508425 Vimu1g00867 1 5903732 5904443 PCT