Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00862 ATGGTGAACAGAAAAAGACGGTTAGATCAAATCAAGCATCCATTCAATTCTCACCCCTTTGAAGCTGTTGCCTTTGGATCATGGCAAGCTGTGAAGTTCATAAAGATTGAGGCAGGAACTATGTCTATACATTTTGTAGATAATCATTATGTGACTATGGAGAAAGGACCCTTGTCAGACATTCGGATAAGGTCAAGGAAAGCTACTTTATCTGATTGCTCCCGATTTCTGCGACCTGGAATTGACATATGTGTGCTATCTACCCCTCAACAATCTAATGATTCAGATGCAGTTGTTATGGACCCTGTTTGGTTGGATGCTAAAATAAGCTCTGTACAAAGAAAACCTCATGACTCTGAGTGCTCCTGTCAGTTTTATGTCAATTTCTATGTTCATCAAGGTTCACTTGGTGCAGAGTTAAGAACTCTTAGCAAGGAGATTAAAGTTATTGGAATCAAACAAATATCCATTCTCCAAAAACTTGACAATATTGCTTGTGAAGATCAGCACTATCGGTGGGCATCATCCGAGGACTGTTCCATGATATCACATACTAAATTACTTTTGGGCAAATTGTTATGTGATCTTTCATGGCTAGTTGTTACCTCTGCTTTAAAGAAGATTTCATTTTGTCTAAAATGTCTAGAAGAAAAGCTAGTCTATCAAATTTTGGGAAGAGGCAGTGATAACAGTTCATTGAATAAAGATTTTCACATTGATGTTGTGAATTTCAAAACAGAAAGTGGTTATATAGTATCCTTTGTTTATCAAGTAGCTACACGTAAAAGTAAGAGGATTGATCATGTACAGGAATCTCATGAAGATAAACTATTGCAATCTTATAATGTTGAGGGTGAGGGCTTGCGGCGATCTAAGCGTAGGAATGTACAACCAGAACGTTACATTGGTAGTGTTAATGTTTCTTCTGAGATTGATGTTGGTTCTTTCAGAAACAGACCACCAGTGAAGATAGACACATGGAAAGAAGAGGACGATGAAGAACTGCATATACCATTAGCATGCCTGTTTGGTTTGCAGAAGAACACTCCAGAAGGGGTTAATGAAAATCATCAAAAGGAGGCAAGCACCTGCCGGGAGCTTGTGATGCATAAGAGGAGAATGACTGCTAAGCAGGAGGTAAAGTCAGGAGAAAATTATCATAATGAAGATCAAAATCGACTTGCTATTGTTCCTCTTCCCGATCAAGATGATCCGTTACTTGTTGAGCATTGTGATGATTTCGATGAAAAGGTTACTAGAAGTTATGGTCATGAATCCTCTAAACATTATTCCAAATGTTATGATCTAACTAGTACTCCCAATAAATCGAAGAAGAAAGATGATAAATTGTTAGCTTTTGAGACTAATAACCATCCTGCTAAGTCAGATGATGTAGAAAAGACTGATGATTTGTCATTGAGATATCATTATAGTTATGGTGTCCCCAAGTCAAAGAACAAGAATTTAAGTGGTTTAGATGATATAATAGATCTTGGAAATAAATGGGAAGGGATTAGATCCAACAAAGAAGTTCAAAAGAAAAAATATCATGCATCGTATTCAAGAAGTAGAGATCATGGAGAAGAAAAAAGGTACAAATATAAAGACAGAACCTTAAATGCAGCTGCCTACAAGGATTTGATAAATTCGTACCTAAAGAATATTAATACAATATCTACTCAAGAAGAACCATCTATTACTGACCAGTGGAAGGAAAACAATACAACTAGTAGCATTGGGCAAAAGACAGAAACAGAAATGCCTGTTGAAGAGGATGCAGAAGAAGTATCTGAAATGGATATGTTGTGGAGAGAAATGGAAGTGTCATTGGCATCATGCTATCTAGAAGAGGATTCAAATGCTGCTACTGTCACTGAGACTGTGGAAATCCCGAACCGAGGCTGTCCACATGATTTCAGAATGAATGAAGAAATTGGAATTTACTGCTATAGATGTGGCTTTGTGGAAACTGAGATCAAATATATTACACCACCCTTTATTCAACATTCTTCATGGCACCAAGAGGAGAGGCACAGTGCTGAAGAAGATTCACGAACAAAGGTTGATGAGGATGATGACTTGGATCTTTTCCCCACCCCAGAATCTCCTAAGGGACCTGTGTCTCAAGAAAATGATAACGTTTGGGCATTGATTCCCGAACTTAGAACAAAGTTGCATGCTCATCAGAAGAAAGCCTTTGAGTTTCTTTGGCAAAACATTGCAGGGTCAATGGAACCTAGACTTATGGAAGCAACATCCAAAAGAATAGGTGGCTGTGTGGTATCTCATACTCCTGGTGCTGGAAAAACTTTTCTCATCATTGCTTTTCTTGTGAGCTACTTGAAGTTATTCCCAGGGAAGAGACCTCTTGTTCTTGCTCCAAAAACAACCCTCTATACTTGGTACAAAGAATTTATCAAGTGGGATATTCCTATACCAGTGTATCTGATTCATGGACGTAGAACATACCGGGTATTCAAGCAGAAATCACCGGTTGTTCTTCCTGGAGTTCCCAAGCCCACTGATGATGTGAAGCATGTTTTGGATTGCCTTGAGAAGATACAAAAATGGCATTCACACCCGAGTGTTCTGATAATGGGTTATACTTCATTTTTAACATTGATGCGTGAGGATTCAAAGTTTGCACACAGAAAATACATGGCCAAAGTGCTGAGGGAAAGCCCGGGGATCTTGGTTCTGGATGAAGGGCACAACCCCAGAAGCACTAAATCAAGGCTGAGAAAGGCTCTGATGAAAGTTCAAACAAAATTGAGAATACTGCTTTCTGGTACATTGTTTCAGAACAATTTCTGTGAATACTTCAACACTCTGTGCTTGGCAAGACCAAAGTTCATTCATGAAGTACTGAAAGCATTAGACTCCAAATACAGAAGGAAAGGAAAAGTGGCGAAAAAGGCAAGCCATTTATTAGAGTCACGGGCCAGAAAATTCTTCTTAGACAAAATTGCTAAGAAGATTGACTCTGATAAAGGTAGGGAGAGGCAGCAGGGTCTAAAGATGTTGAGAAATGTGACAAATGGATTCATAGATGTTTATGAAGGTGGTAGCTCTGACGGTCTACCTGGTTTACAAATTTATACACTGTTAATGAATTCAACCGATACACAGCATGAAATTTTGCTTAAACTACACAAGAAAATGGCGAAGTGCAATGGTTACCCCCTGGAATTAGAGCTTATGATAACTCTTGGTTCAATACATCCCTGGCTGGTGAAAACAGCAGTGTGTGCTGAGAAGTTTTTCACTTCTGAGCAATTGATGGAGCTAGAAAAATGCAAATTTGACCTGAAAATAGGGTCGAAGGTAAGATTTGTTTTGAGCCTTATCTACCGTGTTGTGAAAAACGAGAAGGTTCTGATATTTTGCCACAACATTGCACCAGTGAAGCTATTTATGGAATATTTTGAGAAGTTTTTTGGATGGCTAAGAGGTAGAGAAGTGTTGGTACTAACTGGGGAATTAGAACTGTTTGAAAGAGGGAGAGTAATGGACAAGTTTGAGGAACCTGGTGGAGTAGCAAAAGTACTTCTTGCTTCTATTACAGCTTGTGCTGAAGGCATTAGTTTGACAGCAGCTTCACGAGTTATTATGTTGGATTCAGAATGGAATCCTTCAAAAACCAAGCAAGCCATTGCTCGGGCCTTTCGGCCTGGTCAGCAGAAAGTTGTTTATGTTTATCAGCTTTTAGTGACAGGTTCATTGGAGGAAGATAAGTACAGAAGAACCACTTGGAAAGAATGGGTTTCAAGCATGATCTTCAGTGAGGCCTTTGTTGAAGACCCTTCTCAGTGGCAAGCTGAGAAGATTGAAGATGATATACTCAGAGAAATGGTTGCTGAAGATAGCTCTAAATCATTCCACATGATCATGAAGAATGAAAAGGCTTCTTCTACCAACAAATAA 3924 0.3889 MVNRKRRLDQIKHPFNSHPFEAVAFGSWQAVKFIKIEAGTMSIHFVDNHYVTMEKGPLSDIRIRSRKATLSDCSRFLRPGIDICVLSTPQQSNDSDAVVMDPVWLDAKISSVQRKPHDSECSCQFYVNFYVHQGSLGAELRTLSKEIKVIGIKQISILQKLDNIACEDQHYRWASSEDCSMISHTKLLLGKLLCDLSWLVVTSALKKISFCLKCLEEKLVYQILGRGSDNSSLNKDFHIDVVNFKTESGYIVSFVYQVATRKSKRIDHVQESHEDKLLQSYNVEGEGLRRSKRRNVQPERYIGSVNVSSEIDVGSFRNRPPVKIDTWKEEDDEELHIPLACLFGLQKNTPEGVNENHQKEASTCRELVMHKRRMTAKQEVKSGENYHNEDQNRLAIVPLPDQDDPLLVEHCDDFDEKVTRSYGHESSKHYSKCYDLTSTPNKSKKKDDKLLAFETNNHPAKSDDVEKTDDLSLRYHYSYGVPKSKNKNLSGLDDIIDLGNKWEGIRSNKEVQKKKYHASYSRSRDHGEEKRYKYKDRTLNAAAYKDLINSYLKNINTISTQEEPSITDQWKENNTTSSIGQKTETEMPVEEDAEEVSEMDMLWREMEVSLASCYLEEDSNAATVTETVEIPNRGCPHDFRMNEEIGIYCYRCGFVETEIKYITPPFIQHSSWHQEERHSAEEDSRTKVDEDDDLDLFPTPESPKGPVSQENDNVWALIPELRTKLHAHQKKAFEFLWQNIAGSMEPRLMEATSKRIGGCVVSHTPGAGKTFLIIAFLVSYLKLFPGKRPLVLAPKTTLYTWYKEFIKWDIPIPVYLIHGRRTYRVFKQKSPVVLPGVPKPTDDVKHVLDCLEKIQKWHSHPSVLIMGYTSFLTLMREDSKFAHRKYMAKVLRESPGILVLDEGHNPRSTKSRLRKALMKVQTKLRILLSGTLFQNNFCEYFNTLCLARPKFIHEVLKALDSKYRRKGKVAKKASHLLESRARKFFLDKIAKKIDSDKGRERQQGLKMLRNVTNGFIDVYEGGSSDGLPGLQIYTLLMNSTDTQHEILLKLHKKMAKCNGYPLELELMITLGSIHPWLVKTAVCAEKFFTSEQLMELEKCKFDLKIGSKVRFVLSLIYRVVKNEKVLIFCHNIAPVKLFMEYFEKFFGWLRGREVLVLTGELELFERGRVMDKFEEPGGVAKVLLASITACAEGISLTAASRVIMLDSEWNPSKTKQAIARAFRPGQQKVVYVYQLLVTGSLEEDKYRRTTWKEWVSSMIFSEAFVEDPSQWQAEKIEDDILREMVAEDSSKSFHMIMKNEKASSTNK 1307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00862 1307 Gene3D - 704 992 IPR038718 -
Vimu1g00862 1307 Gene3D - 1031 1307 IPR027417 -
Vimu1g00862 1307 CDD SF2_C_SNF 1100 1236 - -
Vimu1g00862 1307 MobiDBLite consensus disorder prediction 670 709 - -
Vimu1g00862 1307 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1111 1272 IPR001650 -
Vimu1g00862 1307 Pfam Helicase conserved C-terminal domain 1108 1224 IPR001650 -
Vimu1g00862 1307 MobiDBLite consensus disorder prediction 671 693 - -
Vimu1g00862 1307 Pfam SNF2-related domain 731 993 IPR000330 GO:0005524|GO:0140658
Vimu1g00862 1307 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1026 1285 IPR027417 -
Vimu1g00862 1307 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 53 1303 IPR044567 GO:0080188
Vimu1g00862 1307 CDD DEXHc_ATRX-like 725 955 - -
Vimu1g00862 1307 SMART helicmild6 1136 1225 IPR001650 -
Vimu1g00862 1307 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 750 950 IPR014001 -
Vimu1g00862 1307 SMART ultradead3 721 955 IPR014001 -
Vimu1g00862 1307 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 677 963 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00862 Vimu-Chr1 5848099 5854979 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g00862 1151 1243 RAD5 or RAD16-like Gene Family AT5G05130 40.625 4.42e-11 65.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vimu1g00862 SNF2_N 4e-17 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00862 K10875 - gmx:100811703 2163.27
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g00862 1 5848099 5854979 Vimu1g00862 1 5848099 5854979 ECH
Vimu1g00862 1 5848099 5854979 Vimu1g00862 1 5848099 5854979 PCT