Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00856 ATGGGGACCAAGAACCTCAACTCAAATAAGCATTTTCAAAATGGGGTGAGGAATGTGGGAAATGCTCATTTTTTGCGCTTGTTTTTCCTTTTGTGGTTTATTGTGGTGGCAGTGTTTGGTGAAGAGCGTTGGGATGGGGTTGTTGTCACACAGTCGAACTTCCTGGCACTTGAGGCATTCAAGCAAGAGTTGGTTGATCCCGAAGGCTTCCTCAGAAGCTGGAATGACAGTGGCTATGGAGCTTGTTCTGGAGGTTGGGTTGGTATCAAGTGTGCCCAGGGACAGGTTATTGTGATCCAGCTTCCATGGAAGGGGTTGAAGGGGCGTATCACCGAGAGGATTGGCCAACTTCAAGGGCTAAGAAAGCTTAGTCTCCACGATAACCAAATCGGTGGTTCGATCCCTTCATCACTGGGAGTTCTTCTCAATCTGAGAGGGGTTCAACTCTTCAACAATAGGTTCACAGGCTCCCTCCCTCCTTCTTTAGGTTCATGTCCTTTGCTTCAGTCTTTAGACCTCAGTAACAATCTGCTCAGCGGGACAATCCCGATCAGCCTTGGGAATGCCACTAAGCTTTATTGGCTTAACTTGAGCTTTAATTCCTTCTCTGGCCCTATACCAACTACCTTAACTCGCTTAACTTCTCTCACTTACATATCTCTTCAACACAACAATCTCTCGGGTTCTATTCCTAATTCGTGGGGTGGTAGCTTCAGGAACCACCTCTTTCGCCTCCAAAATCTGATCCTAGATTATAACTTCTTGAGTGGCACTATTCCTACTTCTTTGGGCAACTTGAGTGAACTCACAGAGATTTCTCTCAGTCATAACCAGCTTACAGGACCTATCCCAAATGAAATAGGAAGCCTTTATAGACTTAAGACGGTAGATTTTTCTAGTAATGCATTAAACGGAAGCTTGCCCGCCACTCTCTCTAATGTGTCCTCTCTCACTCTCTTGAATGTAGAGAACAACCACCTGGGTAATCAAATCCCAGAAGCCTTGGGCAGATTGCACAATCTATCTGTTCTAGTTCTTAGCAGAAACCAATTCAGTGGCCATATTCCTCAGAGTATTGGAAACATGTCAAAGCTTACACAGCTTGATTTGTCAATGAATAATCTCAGTGGAGAAATTCCAGCATCCTTTGAAGATCTGAGTGGTCTTGATTTCTTCAACGTTTCTCATAACAACCTCTCTGGTCCGGTTCCAGCCCTACTTGGGCATAAATTTAATTCAAGCTCATTTGTGGGAAATATTCAACTATGTGGATATAGCCCTTCCACCCCATGTCCCTCGCCAGCTCCTTTTGGTTCACCTAAAGAAATATCAGAAAACCATCGACACAAGAAACTAGGCACCAAAGACATAATTCTCATAGTAGCAGGAGTGCTCCTTGTTGTCCTGGTAACACTTTGCTGCATTCTGCTATTCTGCCTGATCAGAAAAAGAACAGCATCAAATGCAGAGGGTGGCCAGGCCACAGGGAGAGCATCTGCATCTGCTGCCACGACAGAAAAAGGAGTCCCTCCTGTCGCAGGTGAAGCTGAAGCTGGTGGTGGTGAGGCCGGAGGTAAGCTAGTCCACTTTGATGGACCATTGGCTTTTACAGCTGATGATCTCTTGTGTGCAACAGCAGAGATAATGGGAAAGAGTACGTATGGAACTGTTTACAAGGCTACATTAGAGGATGGAAGTCAGGCTGCAGTTAAACGATTGAGGGAAAAGATCACGAAAGGTCAGAGAGAATTCGAATCTGAAGTTAGTATTGTAGGAAGAATTCGACACCCAAATCTTTTGGCATTGAGAGCCTATTACTTAGGACCCAAAGGAGAAAAGCTTCTAGTATTTGACTACATGCCTAAGGGAAGTCTTGCTTCATTCCTACACGCTCGTGGGCCCGAAACAGCCATTGATTGGCCAACAAGGATGAAAATAGCGCAGGGAATGGCTCGTGGGTTGTTATACCTTCATTCCAATGAAAACATTATTCACGGAAACCTTACGTCCAGCAATGTGCTGTTGGATGAGAATACGAATGCTAAAATAGCTGATTTTGGCCTTTCTCGGTTGATGACAACTGCTGCTAATTCTAACGTGATTGCCACTGCTGGGGCATTGGGATACCGAGCACCTGAGCTCTCGAAGCTTAAGAAAGCCAACACAAAAACTGATGTATACAGTCTTGGTGTCATCTTGTTAGAACTCCTAACGGGGAAGCCACCTGGTGAGGCTTTGAATGGCGTGGATTTACCTCAGTGGGTTGCCTCCATTGTCAAAGAGGAGTGGACAAATGAAGTTTTCGATGTAGAGTTGATGAGAGATGCTTCAACATACGGCGACGAAATGCTGAACACGTTGAAGCTTGCTTTGCACTGTGTTGATCCTTCTCCATCAGCACGACCAGAAGTCCAGCAAGTCCTTCAGCAGCTTGAAGAGATTAGACCGGAGATATCCAGTTCGGGTGACGATGGAGCCATCCCTTCCACCAGTGAATGA 2499 0.455 MGTKNLNSNKHFQNGVRNVGNAHFLRLFFLLWFIVVAVFGEERWDGVVVTQSNFLALEAFKQELVDPEGFLRSWNDSGYGACSGGWVGIKCAQGQVIVIQLPWKGLKGRITERIGQLQGLRKLSLHDNQIGGSIPSSLGVLLNLRGVQLFNNRFTGSLPPSLGSCPLLQSLDLSNNLLSGTIPISLGNATKLYWLNLSFNSFSGPIPTTLTRLTSLTYISLQHNNLSGSIPNSWGGSFRNHLFRLQNLILDYNFLSGTIPTSLGNLSELTEISLSHNQLTGPIPNEIGSLYRLKTVDFSSNALNGSLPATLSNVSSLTLLNVENNHLGNQIPEALGRLHNLSVLVLSRNQFSGHIPQSIGNMSKLTQLDLSMNNLSGEIPASFEDLSGLDFFNVSHNNLSGPVPALLGHKFNSSSFVGNIQLCGYSPSTPCPSPAPFGSPKEISENHRHKKLGTKDIILIVAGVLLVVLVTLCCILLFCLIRKRTASNAEGGQATGRASASAATTEKGVPPVAGEAEAGGGEAGGKLVHFDGPLAFTADDLLCATAEIMGKSTYGTVYKATLEDGSQAAVKRLREKITKGQREFESEVSIVGRIRHPNLLALRAYYLGPKGEKLLVFDYMPKGSLASFLHARGPETAIDWPTRMKIAQGMARGLLYLHSNENIIHGNLTSSNVLLDENTNAKIADFGLSRLMTTAANSNVIATAGALGYRAPELSKLKKANTKTDVYSLGVILLELLTGKPPGEALNGVDLPQWVASIVKEEWTNEVFDVELMRDASTYGDEMLNTLKLALHCVDPSPSARPEVQQVLQQLEEIRPEISSSGDDGAIPSTSE 832
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00856 832 MobiDBLite consensus disorder prediction 490 520 - -
Vimu1g00856 832 CDD STKc_IRAK 549 814 - -
Vimu1g00856 832 MobiDBLite consensus disorder prediction 813 832 - -
Vimu1g00856 832 ProSiteProfiles Protein kinase domain profile. 543 818 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g00856 832 Gene3D Ribonuclease Inhibitor 241 435 IPR032675 -
Vimu1g00856 832 Gene3D Phosphorylase Kinase; domain 1 549 620 - -
Vimu1g00856 832 FunFam Leucine-rich repeat receptor-like kinase 52 162 - -
Vimu1g00856 832 FunFam Leucine-rich repeat receptor-like protein kinase 528 619 - -
Vimu1g00856 832 SUPERFAMILY Protein kinase-like (PK-like) 547 815 IPR011009 -
Vimu1g00856 832 Pfam Protein tyrosine and serine/threonine kinase 546 811 IPR001245 GO:0004672|GO:0006468
Vimu1g00856 832 SMART LRR_typ_2 314 338 IPR003591 -
Vimu1g00856 832 SMART LRR_typ_2 213 236 IPR003591 -
Vimu1g00856 832 SMART LRR_typ_2 362 385 IPR003591 -
Vimu1g00856 832 SMART LRR_typ_2 266 290 IPR003591 -
Vimu1g00856 832 SMART LRR_typ_2 117 141 IPR003591 -
Vimu1g00856 832 FunFam Leucine-rich repeat receptor protein kinase EMS1 163 237 - -
Vimu1g00856 832 Gene3D Transferase(Phosphotransferase) domain 1 621 825 - -
Vimu1g00856 832 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 238 434 - -
Vimu1g00856 832 SUPERFAMILY L domain-like 90 423 - -
Vimu1g00856 832 Gene3D Ribonuclease Inhibitor 53 164 IPR032675 -
Vimu1g00856 832 Pfam Leucine rich repeat N-terminal domain 55 91 IPR013210 -
Vimu1g00856 832 FunFam Pollen receptor-like kinase 1 620 824 - -
Vimu1g00856 832 PRINTS Leucine-rich repeat signature 168 181 - -
Vimu1g00856 832 PRINTS Leucine-rich repeat signature 266 279 - -
Vimu1g00856 832 Gene3D Ribonuclease Inhibitor 165 240 IPR032675 -
Vimu1g00856 832 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 244 814 - -
Vimu1g00856 832 Pfam Leucine rich repeat 340 399 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00856 Vimu-Chr1 5778112 5780713 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g00856 44 816 Receptor kinase-like Gene Family AT3G51740 64.698 0.0 962
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vimu1g00856 PK_Tyr_Ser-Thr 1.7e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00856 - - gmx:100811174 1353.19