Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00854 TGTATGGTTATTCCAGGTTCTTTTGTGAAGTCCAGAGGTTTAGGAAGAAGGGCAATCCCTAAAGATATTATACTCAGAAATGTTAGTGGTAGGGTTTGGTGTATTAAAACTCTTTTTTTTGGACAGAAAATCTACTTTGGAGAGAGTTGGAAGGTTTTTCAAGAAGAGAACTCTATAAGAAAAGAAGAGTTTATGCTTTTCAAGTATGATGGGACCAATGTATTTAAGGTGGTAATTCTTGAACAATCATCACGGTGTGAAAGGAGAGAACTTGAAGAAGATGAGGTGATAGCATCACCGAAGAGGAAAAGAATGAAAAATGTATGA 327 0.3578 CMVIPGSFVKSRGLGRRAIPKDIILRNVSGRVWCIKTLFFGQKIYFGESWKVFQEENSIRKEEFMLFKYDGTNVFKVVILEQSSRCERRELEEDEVIASPKRKRMKNV 108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00854 108 SMART B3_2 2 83 IPR003340 GO:0003677
Vimu1g00854 108 Gene3D - 1 86 IPR015300 -
Vimu1g00854 108 ProSiteProfiles B3 DNA-binding domain profile. 1 83 IPR003340 GO:0003677
Vimu1g00854 108 PANTHER B3 DOMAIN-CONTAINING 4 94 - -
Vimu1g00854 108 Pfam B3 DNA binding domain 2 80 IPR003340 GO:0003677
Vimu1g00854 108 SUPERFAMILY DNA-binding pseudobarrel domain 2 82 IPR015300 -
Vimu1g00854 108 CDD B3_DNA 2 80 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00854 Vimu-Chr1 5767735 5771389 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g00854 2 104 B3 DNA Binding Superfamily AT5G66980 26.446 1.50e-10 54.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vimu1g00854 B3 2.8e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00854 - - vum:124821314 167.548