Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00851 ATGGTTGATAATAGTGTGTTAGAGCTCAACCTTGGTTTAGGTAACAACAACAATAACAACAACGTTGTTGTTGGTGGTGATGCACATGCACATGCAGGACAGTCACCGAGGCAAAGGTGTCCGGCACCATTTCTGTTGAAGACGTACGATCTGTTGGAAGAAGGTGAGAGTGAAGATATGACAAGAATTGTATCGTGGAATGAAGAAGGAAGTGCTTTTGTTGTGTGGTCTCCTGCAGAATTCTCTGAGCACACCTTGCGTAGATATTTCAAGCATAACAACTTCTCTAGCTTCATTCGCCAATTGAACACTTATGGATTTAAGAAAATGTCATCGAAAAGATGGGAATTCAAACACGAGAAATTTCAGAGGGGTTGCAGGCACATGCTAAGTGAAATCAGAAGAAAAAAGTGCGAGCCAAGTGTTTTTCCTGCATACCTGAAGTCTTCTTCTGAGGAAAATGCAACAGAAGAAAACAATCAGCAACTTCTTATGGAGGAGAACAAGAACCTTAAGAAGGAGAGATTAGAGCTTCAAATGCAGATTGATGAATGCAAAGCACTTGAAATCAAGTTGCTCGCATGCCTCTCTCAGTTTGTGGATACCCAACAAACTAAAATTAGGAGACTTTGTTAA 636 0.4072 MVDNSVLELNLGLGNNNNNNNVVVGGDAHAHAGQSPRQRCPAPFLLKTYDLLEEGESEDMTRIVSWNEEGSAFVVWSPAEFSEHTLRRYFKHNNFSSFIRQLNTYGFKKMSSKRWEFKHEKFQRGCRHMLSEIRRKKCEPSVFPAYLKSSSEENATEENNQQLLMEENKNLKKERLELQMQIDECKALEIKLLACLSQFVDTQQTKIRRLC 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00851 211 SUPERFAMILY "Winged helix" DNA-binding domain 41 136 IPR036390 -
Vimu1g00851 211 ProSitePatterns HSF-type DNA-binding domain signature. 86 110 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vimu1g00851 211 Pfam HSF-type DNA-binding 44 136 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vimu1g00851 211 Coils Coil 154 191 - -
Vimu1g00851 211 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 37 182 IPR027725 -
Vimu1g00851 211 FunFam Heat stress transcription factor A-6b 37 137 - -
Vimu1g00851 211 SMART hsfneu3 40 136 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vimu1g00851 211 Gene3D - 36 137 IPR036388 -
Vimu1g00851 211 PRINTS Heat shock factor (HSF) domain signature 98 110 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vimu1g00851 211 PRINTS Heat shock factor (HSF) domain signature 44 67 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vimu1g00851 211 PRINTS Heat shock factor (HSF) domain signature 85 97 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00851 Vimu-Chr1 5751306 5753290 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g00851 32 205 HSF AT5G62020 35.407 7.74e-41 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Vimu1g00851 HSF_DNA-bind 2e-30 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00851 K09419 - gmx:100789792 291.582