Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00844 ATGAAGATTGCATCTCACTCCGACATTACTGAAGCAGTCCAGCCTCTCCTGTCGCCGGAATGCGAGCACTCGGCGGAGGATCGGGGTGCGCCGAATGGGTCAATCAGCGGAGCGGTGTTCAACATATCGACGACCATGATCGGTGCCGGAATCATGTCGGTTCCGGCGACGATGAAGGTGCTCGGCTTAGTTCCGGGGTTCCTGGTGATCCTGTTGGTGGCACTTGTAACGAATGTGACCGTGGAATTTATGCTGAGGTACACGAGTTCCGGAAAATCCACTACTTACGCGGGCATGATGGGTGAATCGTTTGGGTCCGTTGGATCCCTCGCCGTTAAGATTTGCGTTCTCATAACCAATTTCGGAATCCTCATTATATATCTCATTATTCTAGGAGACGTGCTGTGTGGAAACGAGTCCAACGGAATTACACACTTGGGTGTTCTACAAGAATGGTTTGGCATCAATTGGTGGACCTCTCGTGCTTTTACTCTTCTTATTGTTGCTCTTTTCATAATGCTTCCACTCGTTATGTTACGTCGTGTTGATTCACTGAGGTATACTTCTGCAATATCAATCCTACTAGCATTGGTCTTTCTTGCAATATGCTCATCAATGGCTTTTAGTGCATTGTTGTCCGGCAAAACTCAATCACTAAGGATGGTGCCTGATTTCTCTCTAGTCACTGTCCTTGATCTTTTCACCACTATCCCTGTCTTTGTCACTGGTTTCGGATTCCATGTCAATGTTCATCCAATTAGAGCAGAGATTGGAAAAGTTACACACATGGGTAAGGCTGTGAAGATTTCCTTAGTAATATGCGTGGTTGTTTACTTTGCCATTGGCTTCTTTGCGTACCTATTATTTGGAGACTCCATCATGCCGGATGTGTTAGTAAACTTTGATCAAAACTCCAATACCCATGTTGGTCGATTGCTGAATGATATTGTTAGAATAAGCTATGCACTCCATCTTGCCCTTGTCTTCCCCATCATGAACTATTCCTTGAGGATCAACATAGATGAACTTATTTTCTCAAACAAAAATAAACCTCCTTTGGCTTTGGACACCCCAAGATTTGTGTCACTCACTTTGTCTTTGCTAGTCCTCACATACTTGGTGGCTGTGGCCATCCCAAACATTTGGTATTTCTTTCAGTTCTTGGGATCCACAACCGTTGTTTGCACCTCATTCATCTTTCCTGCTGCAATAGTTCTAAGGGACATGCATGGCATATCAAAGACAAAAGATCGAGTCATTGCAATTTCGGTCATTGTTTTTGCTGTTGGGACAAGCGGAATTGCTATATGGACCAACTTGAATCCAGGGGATGGTTAA 1338 0.4454 MKIASHSDITEAVQPLLSPECEHSAEDRGAPNGSISGAVFNISTTMIGAGIMSVPATMKVLGLVPGFLVILLVALVTNVTVEFMLRYTSSGKSTTYAGMMGESFGSVGSLAVKICVLITNFGILIIYLIILGDVLCGNESNGITHLGVLQEWFGINWWTSRAFTLLIVALFIMLPLVMLRRVDSLRYTSAISILLALVFLAICSSMAFSALLSGKTQSLRMVPDFSLVTVLDLFTTIPVFVTGFGFHVNVHPIRAEIGKVTHMGKAVKISLVICVVVYFAIGFFAYLLFGDSIMPDVLVNFDQNSNTHVGRLLNDIVRISYALHLALVFPIMNYSLRINIDELIFSNKNKPPLALDTPRFVSLTLSLLVLTYLVAVAIPNIWYFFQFLGSTTVVCTSFIFPAAIVLRDMHGISKTKDRVIAISVIVFAVGTSGIAIWTNLNPGDG 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00844 445 PANTHER AMINO ACID TRANSPORTER 27 431 - -
Vimu1g00844 445 Pfam Transmembrane amino acid transporter protein 33 434 IPR013057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00844 Vimu-Chr1 5684627 5687622 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g00844 9 440 Amino Acid or Auxin Permease AAAP Family AT3G56200 52.765 3.97e-155 445
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00844 - - gmx:100794031 693.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g00844 1 5684627 5687622 Vimu1g00844 1 5684627 5687622 ECH
Vimu6g01671 6 15352124 15355720 Vimu1g00844 1 5684627 5687622 PCT