Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00838 ATGGCCTCTTTCTACTTCCTCTTGCTTCTTCTTGTCAGTGCAACAACTATTACAGCTTCTGGTGTAGACCTATGTACAGACTTTTACTCCTGCACTTGCCCAAACTTGTTAACCATAGTCAAGAAAGGAGTGGCTCAAGCCATTAGAAAAGAACCACGCATGGGGGTTTCCTTACTCCGATTGCATTTCCATGACTGCTTTGTAAACGGTTGTGATGCATCAATACTGTTGGATGATAGTAGCAACTTCGAAGGAGAGAAAACCGCAGCAGCTAACAACCAATCAGCCAGAGGGTTCAATGTGATAAATGATATTAAGTGCAGTGTGGAGAAAGAGTGTCCCAAAGTGGTGTCCTGTGCCGATATTCTTGCTCTGGCAGCTCGAGATTCTGTTTTATCCATTATTATGGCAGTTGAAGATATAGAAGTTTTGCAGTTAGGAGGACCTTCTTGGGAAGTGGGGTTGGGGAGAAGAGATTCTACAACAGCAAGCAGAAAGGATGCTAATAATAACCTTCCTGGGCCTTTCCTCAATCTAGCTAATCTCACAAACAATTTTGCTAATCAAGGCCTCTCTGTTACAGACTTGGTTGCTCTTTCAGGGGCACATACCATTGGCCTGGCTCAGTGCAAAAATTTCCGAGCACACATCTACAATGACTCCAACGTTGATCCCTCCTACCGGAAGTTCATGCAGAGCAAATGCCCAAGAAGTGGAAGGGACAATACATTGGAACCCCTTGACCACCAAACTCCAATCCGTTTCGACAATCTATACTTCCAGAATTTGGTGAGTAAAAAAGCCCTTCTTCATTCCGATCAGGAGCTGTTCAATGGCAGTTCTTCTGATAATCTGGTTAAAAAATACGCTGCCAATACTGCTGCATTCTTTGAAGACTTTGCCAAGGGCATGGTCAAAATGAGTAACATCAAGCCTCTCACAGGAAGCCAGGGAGAGATCAGAATCAATTGCGGGAAACTCAATTAA 987 0.4387 MASFYFLLLLLVSATTITASGVDLCTDFYSCTCPNLLTIVKKGVAQAIRKEPRMGVSLLRLHFHDCFVNGCDASILLDDSSNFEGEKTAAANNQSARGFNVINDIKCSVEKECPKVVSCADILALAARDSVLSIIMAVEDIEVLQLGGPSWEVGLGRRDSTTASRKDANNNLPGPFLNLANLTNNFANQGLSVTDLVALSGAHTIGLAQCKNFRAHIYNDSNVDPSYRKFMQSKCPRSGRDNTLEPLDHQTPIRFDNLYFQNLVSKKALLHSDQELFNGSSSDNLVKKYAANTAAFFEDFAKGMVKMSNIKPLTGSQGEIRINCGKLN 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00838 328 ProSiteProfiles Plant heme peroxidase family profile. 23 328 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vimu1g00838 328 Gene3D Peroxidase, domain 2 173 307 - -
Vimu1g00838 328 PRINTS Plant peroxidase signature 147 162 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu1g00838 328 PRINTS Plant peroxidase signature 246 261 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu1g00838 328 PRINTS Plant peroxidase signature 33 52 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu1g00838 328 PRINTS Plant peroxidase signature 57 77 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu1g00838 328 PRINTS Plant peroxidase signature 302 315 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu1g00838 328 PRINTS Plant peroxidase signature 194 206 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu1g00838 328 PRINTS Plant peroxidase signature 262 279 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu1g00838 328 CDD secretory_peroxidase 27 326 IPR033905 GO:0004601|GO:0042744
Vimu1g00838 328 Gene3D - 27 324 - -
Vimu1g00838 328 FunFam Peroxidase 173 307 - -
Vimu1g00838 328 ProSitePatterns Peroxidases proximal heme-ligand signature. 195 205 IPR019793 -
Vimu1g00838 328 Pfam Peroxidase 40 292 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vimu1g00838 328 ProSitePatterns Peroxidases active site signature. 55 66 IPR019794 GO:0004601
Vimu1g00838 328 PANTHER PEROXIDASE 72-RELATED 23 326 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu1g00838 328 PRINTS Haem peroxidase superfamily signature 248 263 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vimu1g00838 328 PRINTS Haem peroxidase superfamily signature 55 69 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vimu1g00838 328 PRINTS Haem peroxidase superfamily signature 195 210 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vimu1g00838 328 PRINTS Haem peroxidase superfamily signature 117 134 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vimu1g00838 328 SUPERFAMILY Heme-dependent peroxidases 24 328 IPR010255 GO:0004601|GO:0006979|GO:0020037
Vimu1g00838 328 FunFam Peroxidase 27 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00838 Vimu-Chr1 5638866 5640725 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g00838 24 328 Peroxidase AT5G05340 55.700 7.00e-122 351
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00838 K00430 - gmx:100793973 549.666