Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00827 ATGGCATCTGAGACTCAGAGGGCTCCTATGTTGCCGAACTCCTTTTTTAAAGTTATTCTTAGAACGAATCTTCAAACCGTTATTCTTCACAAAATATGTCGTTGTGAATTGTATTCCAAAGGTGAGAGGTCTCTTCCAAGAACTTCATCTCTGAACCAGCCAAATGAAACCAGGGCAAGAGAAGTAGCATGCAATTTCATTTCATGCAATCCCTTTTTCACTATTGTCATCACACCTTCTCATGTCATGGAATATCGGATGAACGTACCAGATCTAGAAGGCATTATTGAAAAGAAGGAGTACATGGTGCTGCAGCGTGGGGAAAGATCGTGGAGAGTAAGGATGTTATTTAATAATGCTCGTTATAGATTCGGTGCTGGTATTCGCCTGTTTCTTACGGAAAATGAATTGAAGGAAAGAGATATTTGTATATTTGAATTGATTAACAAGGATAATTGTATTTTTAAAGTTTATGTTTTTTCGAGAGACAACTAA 495 0.3737 MASETQRAPMLPNSFFKVILRTNLQTVILHKICRCELYSKGERSLPRTSSLNQPNETRAREVACNFISCNPFFTIVITPSHVMEYRMNVPDLEGIIEKKEYMVLQRGERSWRVRMLFNNARYRFGAGIRLFLTENELKERDICIFELINKDNCIFKVYVFSRDN 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00827 164 CDD B3_DNA 71 161 IPR003340 GO:0003677
Vimu1g00827 164 Pfam B3 DNA binding domain 75 162 IPR003340 GO:0003677
Vimu1g00827 164 SUPERFAMILY DNA-binding pseudobarrel domain 69 163 IPR015300 -
Vimu1g00827 164 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 45 163 IPR044837 -
Vimu1g00827 164 SMART B3_2 72 163 IPR003340 GO:0003677
Vimu1g00827 164 ProSiteProfiles B3 DNA-binding domain profile. 72 163 IPR003340 GO:0003677
Vimu1g00827 164 Gene3D - 51 163 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00827 Vimu-Chr1 5557063 5558080 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g00827 42 160 REM Transcription Factor Family AT1G49480 32.283 7.13e-14 65.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vimu1g00827 B3 2.3e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00827 - - vra:106773422 169.474