Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00798 ATGACCCTCACATGCCTATTACTATTCTTAATCCACATTCTGGTGGTAAAAAATTCTGAGGCTAGTAACAATGTCCCTGCTGTCATAGTGTTCGGAGACTCCTCCGTTGATTCTGGGAACAACAACGTTATAGCCACTGTCCTCAAGAGCAACTTCAAGCCCTATGGTCGTGACTTCGAAGGTGGTCGTCCTACGGGACGCTTCTGCAACGGTCGTGTCCCTCCAGATTTCATTGCTGAGGCCTTTGGCATCAAATCAACCATTCCTGCATACTTAGATCCTGCTTATACCATTCAGGATTTCGCCACCGGTGTTTGCTTTGCCTCTGCTGGAACTGGTTATGATAATGCTACTTCTGCTGTTCTGAACGTGATACCACTGTGGAAGGAACTAGAGTTTTACAAGGAATACCAAGCTAGATTGAGAAGCCATGTTGGTGTAGAAAAAGCCAACGAGATCATAAGCGAAGCCTTGTATTTGATGAGTCTAGGAACCAACGATTTTCTTGAGAACTATTATGTGTTCCCAACCCGAAGAATCCACTTCACTGTGTCACAGTATCAAGATTTTCTACTGAGTATTGCTGAGAATTTTGTGAGGGAATTGTATGCACTTGGAGCACGCAAGTTGTCCATTACTGGTCTTATTCCCGTAGGGTGTCTACCCTTAGAGAGGGCCACCAACATTTTGGGGGACCATGGTTGCAACGAGGAATACAACAACGTTGCTTTGACCTTCAATGCCAAGCTGGAGAATGTGATAGCAAAGCTTAATAGAGAACTACCACAGTTGAAAGCTTTGTCGGCAAATGCATACTCTATTTTCAGTGATATCATTAGAAGACCTTCTGCTTATGGATACGAGGTTGTAGAAAAGGCGTGTTGTTCGACAGGAACGTTTGAGATGAGCTACTTGTGCAGTGACAAGAGTCCACTTACATGCACAGATGCTGAAAAGTATGTGTTTTGGGATGCATTTCATCCTACTGAAAAGACAAATCGCATCGTTTCAACCTATTTGATTCCAAAGCTTAAAGCAACCTTTCGATGA 1050 0.4362 MTLTCLLLFLIHILVVKNSEASNNVPAVIVFGDSSVDSGNNNVIATVLKSNFKPYGRDFEGGRPTGRFCNGRVPPDFIAEAFGIKSTIPAYLDPAYTIQDFATGVCFASAGTGYDNATSAVLNVIPLWKELEFYKEYQARLRSHVGVEKANEIISEALYLMSLGTNDFLENYYVFPTRRIHFTVSQYQDFLLSIAENFVRELYALGARKLSITGLIPVGCLPLERATNILGDHGCNEEYNNVALTFNAKLENVIAKLNRELPQLKALSANAYSIFSDIIRRPSAYGYEVVEKACCSTGTFEMSYLCSDKSPLTCTDAEKYVFWDAFHPTEKTNRIVSTYLIPKLKATFR 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00798 349 CDD SGNH_plant_lipase_like 26 343 IPR035669 -
Vimu1g00798 349 SUPERFAMILY SGNH hydrolase 28 346 - -
Vimu1g00798 349 PANTHER GDSL ESTERASE/LIPASE EXL3 10 340 - -
Vimu1g00798 349 Gene3D SGNH hydrolase 14 347 IPR036514 -
Vimu1g00798 349 FunFam GDSL esterase/lipase APG 17 345 - -
Vimu1g00798 349 Coils Coil 247 267 - -
Vimu1g00798 349 Pfam GDSL-like Lipase/Acylhydrolase 28 339 IPR001087 GO:0016788
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00798 Vimu-Chr1 5344401 5349458 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g00798 6 345 Pollen Coat Proteome AT1G75910 36.232 1.22e-67 214
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00798 - - gmx:100805486 633.639