Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00795 ATGATTTCCCTGCTGATTTCAAATGGCTTCTTTCTTTCCCACTGGACCATGCCTCCAAAACCCCTTCCACGAAAAACCCCATTTTTCATTTCCCTCAAAGTTCGATGCTTTCGTGCTTCAGAGTCAAACCCAGTTCCGGATTTTCCTCCGCCGAGTTCCGTTCTCTTGCCACGTTCACGTTCCATCAAACGGGTCTCTCGCCTCTTGAGGACTGAACTTCAACGCGCTCTAATGGATTACCTGCATTTCACGCGCGGCTACACCTTCTCCGACGCGGAGTACATAAGCAAGAACTCGCCTCGTTTTGTAGAATCATTGGTGCCAATGATTGACGACAAAGATGACGTTCCCCGATCGTTACGGAAGTTCTTCAGGTACAACCCCATCAACGAGTTTGAACCGTTTTTCGAGAGTTTGGGAATTGGCCTTTCCGAGTTGCATTTGTTTCTCCCCCATGGCATGATTTTCTTGGCTGATGATCACGTGTTGCTTCATAATTTCCATGTTTTGTGTAACTACGGGGTGCCAAGGAATAGAATGGGGAGGTTCTATAAAGAGGCAAAAGAAATTTTTGGGTATGCCGGTGCGTTGTTGGAGTCAAAGTTGCAAGGCTATGAGAATTTGGGTTTGAGTAGATCAACTGTTGTGAAGCTTGTTGTTTGCTGTCCTTTGCTTTTGGTTGGTGATGTCAATTATGAATTAGTTGCTGTGCTTGAGTGGATGAAGAGAATAGGGATTGAAAGTGATTTGATGGTCAATTACTTGTCTTGTTCAAGGACATATAGTTGGAAAAGAATGCTTAGTACATTGCAGTTTCTTCATAAAGTGGGTTATTCTGAGGAACGGATCCACAATTTGTTTAGGGGAAATCCGAAACTGTTTTTGGAAGGTATTGGGAAGAAGGTGTACTTATTTTTTGGTCGATTGGTTAAAATTGGTGTTGAGATAAATGTGATTTATTCTTATTTTGTGGAGTATCCCAATATCTTGTCATATAAGTGTGCGAAAAATATGTTGAAAGTGATTGGCTTTTTGTGTGCTATTGGAATGGGAAAAAATGACATTTCTCACATTTTCTCTAAGCACGTGCATCTCCTGAGTACATGTTCCTTGAAAGGTCATAAAACTGTCTGTCAGGAGTTAAAAGTTGGAAAAGCTGATTTGTATCAAATCATAAAGGATGATCCATTGAAGCTAATTAGTTTTTCATCAAAGCAGCAACAGAAGAGCGATGGAAAGGTAGATAGTCATGACCCACGAAACTATTTGGAAAAAAGAACTTTCTTGCTGAAATTGGGATATACTGAAAACTCTGAAGAGATGGCAAGAGCATTAAGAATGTTCAGAGGTAGAGGTGATCAATTACAAGAAAGGTTTGATTGCCTGGTAGAAGCTGGTTTGGACTATAATAGTGTGATCGAAATGATAAAACGAGCTCCTGTGATTCTAAGTCAGAAGAAAACTGTAATCAAAAGGAAGATTGATTTCTTAAAAAATGTTTTAGATTACCCACTAGAATATCTCGTGGGATTCCCAACATACTTTTGCCATGATTTGGACAAAATTGTTGAAAGACTTTCAATGTATGCATGGCTGAAGGAGAGGAATGCCATAAATCCCACGTTAACCTTGAGTACCATAGTTGCATCCAATGATAAACGCTTTGAAAAGTACTTTGTGAACGTGCATCCTCAAGTTGATGATGCGAGTGTTACAGTTGCTTGTATATCCGGAGTTGGAATTTTCAAGTCTGAGAACACGTTTCTGCTGGTTGAGGAAGCCTTGCCTGGCCCCAAAGTTAAATCAAAATTGTTGAGAAAGTTGCTCTGGATTCTCTATCTGATGAAGAAAAGCATGATATGTTCAGTTGCATTGACCTTAGCCATAGCTGCCACTTCAACTGAAAATGTACCATGTTGCATTTTGATGCCTCAAACAAGCGCCTTTGTAAATGCACGCATCCCTGTCGCGAAGGGTTATTTCTTCCCGATGATTTCCCACCACAATGGAAACCTTCCCTTTCTTTTCTTCCATGGTTCATATAAAAAACCCCTAAGAACACGAAACCTGTTTCCCCTTTCTCTCAAAGTCTCAAGCTTTCCTAGTTCTGAGGCTACCCTTGTTCTTCAAGTCTCAAGGGTGCATTTCATTCACTCACACTTTTCTGTCAAACGGTTATCTCGGCAGGTAAAGGGGAAAGTGCAGGATGTGCTGTTAGATTACTTACATTCGAGCCGGGGATACAGCTTCTTGGATGCTGAGTTCATTAGCAAAAATTCACCATCTTTTGTTCAAGGTTTGGTGTCAGAGTTTCGTGGACAAGATGATGATGTTGCCACTTGTTTGAGGAAGTGGCTGTGGTACAACCCCATTAATGAGTTTGAACCATTTTTTGAGAGTTTGGGGATTAGCCCTCGTGAGTTGCCTTCGTTTCTCCCACGTGGTTTGATGTATTTGTCTGATGATCATGTTATGCTTGCCAATTTCCACGTTTTGAGTAATTATGGAGTTCCAAGGAATAGGGTAGGGAAGATTTATCGAGAGGCAAAGGAGGTTTTCAGGTATCCTAATGGACTGTTGTTGTCGAAATTTCGAGGGTATGAAAGGTTAGGTTTGAGTAGATCCATGGTCATCAAGCTTGTTGTTTGTTGCCCTTCACTTTTGGTTGGTGAAACAAGTGTTGAATTGGCCATGGTTCTGGATTGGTTGAAGAAAATTGGTATTGGACATGATTGGATTGGGAATTACATGTCTTGTTTGAAAACATATGACCCAAGAAGAATGCTTGATGCTATACAATTTGTTCATAAAGTTGGTTATTCTGAAGAACAGATGCACAATTTCTTCAAGGAAAACCCTGCATTGTTACTGGAAGGTCTTGAGAAGAAGGTGTATGTATTTTTGGGTGTAGCATTTAAGTTAAATCTCAATAGGAATGTGATTTATTCTTGTTTTGTAGAATATCCTCATATCTTGACTAAGAAGTGTGCAAAAAATCTTTTGGGAGTGATTGGTTTTTTGCATTATGTTGGAATGGATATAGATGACATTTCGCGTATTTTGTCTAACCACATGCATCTCCTGAGCTCACATCCCTTAAAAGGCCCTAAAGCTGTTTGTTCGCAGTTAAAACTTAGAAAAGCAGATCTATGCCAAATCATAAAGGATGATCCACCGAAGCTAGTTAGTTTGGCTTCAAAACTGAAACAGAATTCTAATTTACAGTTATTGCGTGATGAGACAAGTAAACACTTGGGGAAAACAGCATTCTTGCTGAAGTTGGGATATGCTGAGAACTCTGAGGATATGGCAAAAGCAATAAAAAGATTCCGAGGGAGAGGTGATCAATTACAGGAGAGGTTTGATTGCCTTGTTGAAGCTGGTTTGGACTATAACATTGCACTCAAAATGATAAAATGTGCTCCTATGATTCTAAACCAGAACAAAGCTGTGATTCAAAAGAAGATTGATTTCTTAAGAAACATTTTAGGTTATCCATTAGATTGCGTCGTGGCATTTCCCGCATACTTGTGTTATGATTTAGAGAGAATCATGCTCAGATTTTCAATGTATGCTTGGGTAGCAGAAAGGAAAGCAGCAAAGCCTATGATGGCCTTGAGCACTATCCTCGCATCCTCTGATGAAAAGTTTGTAAAATACATTGTGAATGCACATCCTGAAGGTCCAATCATCTGGGATGGTCTAAAGAAGTTATTGCTAAAAGATAAGAGCCAGCTCTTCCCTTAA 3747 0.3998 MISLLISNGFFLSHWTMPPKPLPRKTPFFISLKVRCFRASESNPVPDFPPPSSVLLPRSRSIKRVSRLLRTELQRALMDYLHFTRGYTFSDAEYISKNSPRFVESLVPMIDDKDDVPRSLRKFFRYNPINEFEPFFESLGIGLSELHLFLPHGMIFLADDHVLLHNFHVLCNYGVPRNRMGRFYKEAKEIFGYAGALLESKLQGYENLGLSRSTVVKLVVCCPLLLVGDVNYELVAVLEWMKRIGIESDLMVNYLSCSRTYSWKRMLSTLQFLHKVGYSEERIHNLFRGNPKLFLEGIGKKVYLFFGRLVKIGVEINVIYSYFVEYPNILSYKCAKNMLKVIGFLCAIGMGKNDISHIFSKHVHLLSTCSLKGHKTVCQELKVGKADLYQIIKDDPLKLISFSSKQQQKSDGKVDSHDPRNYLEKRTFLLKLGYTENSEEMARALRMFRGRGDQLQERFDCLVEAGLDYNSVIEMIKRAPVILSQKKTVIKRKIDFLKNVLDYPLEYLVGFPTYFCHDLDKIVERLSMYAWLKERNAINPTLTLSTIVASNDKRFEKYFVNVHPQVDDASVTVACISGVGIFKSENTFLLVEEALPGPKVKSKLLRKLLWILYLMKKSMICSVALTLAIAATSTENVPCCILMPQTSAFVNARIPVAKGYFFPMISHHNGNLPFLFFHGSYKKPLRTRNLFPLSLKVSSFPSSEATLVLQVSRVHFIHSHFSVKRLSRQVKGKVQDVLLDYLHSSRGYSFLDAEFISKNSPSFVQGLVSEFRGQDDDVATCLRKWLWYNPINEFEPFFESLGISPRELPSFLPRGLMYLSDDHVMLANFHVLSNYGVPRNRVGKIYREAKEVFRYPNGLLLSKFRGYERLGLSRSMVIKLVVCCPSLLVGETSVELAMVLDWLKKIGIGHDWIGNYMSCLKTYDPRRMLDAIQFVHKVGYSEEQMHNFFKENPALLLEGLEKKVYVFLGVAFKLNLNRNVIYSCFVEYPHILTKKCAKNLLGVIGFLHYVGMDIDDISRILSNHMHLLSSHPLKGPKAVCSQLKLRKADLCQIIKDDPPKLVSLASKLKQNSNLQLLRDETSKHLGKTAFLLKLGYAENSEDMAKAIKRFRGRGDQLQERFDCLVEAGLDYNIALKMIKCAPMILNQNKAVIQKKIDFLRNILGYPLDCVVAFPAYLCYDLERIMLRFSMYAWVAERKAAKPMMALSTILASSDEKFVKYIVNAHPEGPIIWDGLKKLLLKDKSQLFP 1248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00795 1248 PANTHER CGI-12 PROTEIN-RELATED 73 563 IPR003690 GO:0003690|GO:0006355
Vimu1g00795 1248 Gene3D Transcription termination factor 3, mitochondrial 129 302 IPR038538 -
Vimu1g00795 1248 Gene3D Transcription termination factor 3, mitochondrial 967 1228 IPR038538 -
Vimu1g00795 1248 Gene3D Transcription termination factor 3, mitochondrial 303 567 IPR038538 -
Vimu1g00795 1248 Gene3D Transcription termination factor 3, mitochondrial 788 966 IPR038538 -
Vimu1g00795 1248 SMART mt_12 1167 1198 IPR003690 GO:0003690|GO:0006355
Vimu1g00795 1248 SMART mt_12 843 873 IPR003690 GO:0003690|GO:0006355
Vimu1g00795 1248 SMART mt_12 878 909 IPR003690 GO:0003690|GO:0006355
Vimu1g00795 1248 SMART mt_12 438 468 IPR003690 GO:0003690|GO:0006355
Vimu1g00795 1248 SMART mt_12 505 536 IPR003690 GO:0003690|GO:0006355
Vimu1g00795 1248 SMART mt_12 321 351 IPR003690 GO:0003690|GO:0006355
Vimu1g00795 1248 SMART mt_12 216 247 IPR003690 GO:0003690|GO:0006355
Vimu1g00795 1248 SMART mt_12 1135 1166 IPR003690 GO:0003690|GO:0006355
Vimu1g00795 1248 SMART mt_12 473 504 IPR003690 GO:0003690|GO:0006355
Vimu1g00795 1248 SMART mt_12 982 1013 IPR003690 GO:0003690|GO:0006355
Vimu1g00795 1248 Pfam mTERF 1115 1217 IPR003690 GO:0003690|GO:0006355
Vimu1g00795 1248 Pfam mTERF 270 486 IPR003690 GO:0003690|GO:0006355
Vimu1g00795 1248 Pfam mTERF 932 1071 IPR003690 GO:0003690|GO:0006355
Vimu1g00795 1248 Pfam mTERF 452 556 IPR003690 GO:0003690|GO:0006355
Vimu1g00795 1248 FunFam mTERF family protein 110 260 - -
Vimu1g00795 1248 FunFam mTERF family protein 772 922 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00795 Vimu-Chr1 5311983 5318649 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vimu1g00795 mTERF 3.4e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00795 - - gmx:100803162 918.687