Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00789 ATGGAAAACTCAGACCACGACGAACCCGAGAAGAAGAGGCCTCATCTCACCTCTGTTTCTTCTCGCACATCTAGAAACTCCATCAACTCTCCTACAACCAACAAAACTGTAACCCCTTTTTCTCTCGCTATCCATCTGTTCATATTTATGTTGCTTTTCACCTCTTTCATTATACTCTTGTGTTCTGTTGATGATCCGGCTGATGCAGGAGTCTTACAGTTCCAAAATCAGCAGCTTGTTCAACAGATCGACGTCCAGAAACATGCTTTGCATGGCCTTGAAGAAAAAATTAGAGAATTAAAAGGAAAGCAAAGTTCTTATGATGACTTGTTAATTGCTTTGAACCAGCTCTGGACTCAGTTGGTTGACGATATGATTCTTCTTGGAATACAAGCTGGGAGAGGCAAAGGCAAAGACACATTGCGATATTTGACTGACATTGAAAATCCTGAAGGTTCACTTCCTTTGTGTCCTGCTGAGGATATATTTCTATGTAGATTAATCCAGAAAGATTCCATTAAAGGAATCAGTGATGATGAGATCACTGGTTATGTTGAGGAGGCCCTTGCTTTGCGTCAATCATCTACAATGGAGTTGTTGAAACTCCTGAAAGATATTATTGATGATCAGATGGAAAGATCAGGTGGTATAGCTCAGATTTTGGACGGAGATATATCTTCAGAAGATGCTATAACCCTAATGACTAAGATTGATGATATGATGAAAGAGGAGGCAAATAATTTGCAAGAAGTGATTGATACTCTCCATGCAAAGCATAAAGAGTATACTGTTGGTATTCAAAATTTTATCAATGAGTGCTTACAAGAAAAATCTGATATTAAACACCTGGCAGGTGAGCTTGATGAGATTGTGGCTGAACTTGAAGAGAGTAGAAGAAAACTAGTCAATCTGGAAATGCAAAAGGACACGTCAATAGGGATGAATTCTCCCAATGCAGACGCAGTGAATGGAAATCTGTCTCCTGAAAACATTGCAGACAGGACCATGGGTTTGCGTGAGTTGAAGGATTCAATTGAAGAAGCAAAGATTGTGGATGCTGATCGTAACTCCGAGCTCCAAGAGGCACAGGAAGATAATCAGACCTTGACAAAGCAATTCCAAGATCTTCAGAATGAACTGAAAGATGATAAGTACATACGCAGTTCACGAATATACTCTTTAGCTAATGATCAACTTCAACATTGGACATCTGAATTGGCCCGGTATAAACCATTGGTAGAATCTCTGCAGGCTGGCAGTGTTCATATTGCAAAATGGGAGAATGAACTAAATTTGAAATTGGAGTCTGCTGATTCTGCAAGGCAGCTCCTTGACAATTCTGATCATAGGATTGATGACCTAGAGCACAAGTTGCAGAAGTGTATTATTGAAAAGAATGATCTTGAAATTAAAATGGAAGAAGCTAAACAGGATGCTGGGAGAAAAGATATCAAATCTGAGTTTCGTGTCATGGCTTCAGCTTTATCTAAAGAAATGGGAATGATGGAAGCTCAATTAAAGCGATGGAAAGATGCAGCTCACGAGGCTGTATCATTACGGGAGAAAGCACATTCACTAAGAGAAGTTTTGAACGTGAAGACAAGTGAACTAAAGAGCCTTGCAAACAAATGTGCTGAGCAGGTTTTGGAAATCAGGTCTTTAAAAATGCTGACTGAAAAGTTACAGAAAGAAAATCAGGAGTTAGAATTTGTTCTGGATATGTATGGCCAGGAGAATTATGATAAAAGCTATTCAGAAGTTAGAGAATCTGAAAGTAAGGCTCACTCTCAAGCTGAAATACTAAAAAATGCTTTGGATGAGCATAGCCTAGAGTTGAGAGTAAAAGCTGCTAATGAAGCTGAAGCTGCTTGTGAACAAAGGCTTTCTGCCGCTGAAGCTGAAATAGAGGACTTGAGGGCCAAGCTGGATGCGTCTGAGAGGGGTATTTTGGAGCTGACTGAGGCTATTAAAGTTAAAGAAGCTGAGGCAGAGGCATATATATCTGAAATTGAGACTATTGGTCAAGCATATGAAGATATGCAGACACAGAACCAAAATCTGTTGGACCAGGTGATTGAGAGGGATGACTATAATATTAAGCTTGTATCAGATAGCGTGAAGGCAAAACAAGCCTACAACACTCTATTGACCCAGAAGCAGGCCTTAGCTAAACAACTTCAACAACTGAATACTTCAATAGAAAATTCAAAAGCGAGGATTGCACATAGTGAAGAACAGATGAAAACCATTCTATCTGAAGCCATTAAGTGTAATCAAGAAGAAAAACACCTTGCAGTCACCCTGGAATTTGCAAGGTGGGAATTGGCAGATGCCGAGAAGGAATTGAAGCTGCTCAAGTCTTCTGTTTCCTCTTCAGAGAAAGAGTACGATCAAATCCAGAAAGACACGGAAGCTATTGAAATGGAATTGGAGAGTGAAAGGAGTTCAAGGAAGAAGCTAGAGGAAGAATTAAGGGAATTGAACAGCCAAATTGCTGAGCTGACTTCTGAAACTGGAGAAACCACAATACAAAAACTTGAAAAAGAAATAAGGATATGCAAGAACATGATCAAGTGTACTGTCTGCACTGATCGTCCGAAGGAGGTTGTGATTGTCAAATGCTATCATTTGTTCTGCAATCCATGCATTCAGAGAAATCTAGAGCTTCGGCACCGCAAATGTCCTGCATGTGGAACAGCATTTGGACAGAGTGATGTTCGTTTTGTAAAGATATGA 2736 0.3984 MENSDHDEPEKKRPHLTSVSSRTSRNSINSPTTNKTVTPFSLAIHLFIFMLLFTSFIILLCSVDDPADAGVLQFQNQQLVQQIDVQKHALHGLEEKIRELKGKQSSYDDLLIALNQLWTQLVDDMILLGIQAGRGKGKDTLRYLTDIENPEGSLPLCPAEDIFLCRLIQKDSIKGISDDEITGYVEEALALRQSSTMELLKLLKDIIDDQMERSGGIAQILDGDISSEDAITLMTKIDDMMKEEANNLQEVIDTLHAKHKEYTVGIQNFINECLQEKSDIKHLAGELDEIVAELEESRRKLVNLEMQKDTSIGMNSPNADAVNGNLSPENIADRTMGLRELKDSIEEAKIVDADRNSELQEAQEDNQTLTKQFQDLQNELKDDKYIRSSRIYSLANDQLQHWTSELARYKPLVESLQAGSVHIAKWENELNLKLESADSARQLLDNSDHRIDDLEHKLQKCIIEKNDLEIKMEEAKQDAGRKDIKSEFRVMASALSKEMGMMEAQLKRWKDAAHEAVSLREKAHSLREVLNVKTSELKSLANKCAEQVLEIRSLKMLTEKLQKENQELEFVLDMYGQENYDKSYSEVRESESKAHSQAEILKNALDEHSLELRVKAANEAEAACEQRLSAAEAEIEDLRAKLDASERGILELTEAIKVKEAEAEAYISEIETIGQAYEDMQTQNQNLLDQVIERDDYNIKLVSDSVKAKQAYNTLLTQKQALAKQLQQLNTSIENSKARIAHSEEQMKTILSEAIKCNQEEKHLAVTLEFARWELADAEKELKLLKSSVSSSEKEYDQIQKDTEAIEMELESERSSRKKLEEELRELNSQIAELTSETGETTIQKLEKEIRICKNMIKCTVCTDRPKEVVIVKCYHLFCNPCIQRNLELRHRKCPACGTAFGQSDVRFVKI 911
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00789 911 ProSiteProfiles Zinc finger RING-type profile. 859 897 IPR001841 -
Vimu1g00789 911 Coils Coil 359 379 - -
Vimu1g00789 911 MobiDBLite consensus disorder prediction 1 17 - -
Vimu1g00789 911 Coils Coil 76 103 - -
Vimu1g00789 911 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 840 910 IPR013083 -
Vimu1g00789 911 MobiDBLite consensus disorder prediction 1 32 - -
Vimu1g00789 911 Coils Coil 768 837 - -
Vimu1g00789 911 ProSitePatterns Zinc finger RING-type signature. 874 883 IPR017907 -
Vimu1g00789 911 SUPERFAMILY RING/U-box 858 902 - -
Vimu1g00789 911 Coils Coil 554 574 - -
Vimu1g00789 911 SUPERFAMILY Tropomyosin 712 859 - -
Vimu1g00789 911 PANTHER RING FINGER PROTEIN-RELATED 7 911 IPR013956 GO:0004842|GO:0010390
Vimu1g00789 911 Pfam Zinc finger, C3HC4 type (RING finger) 858 900 - -
Vimu1g00789 911 Coils Coil 712 753 - -
Vimu1g00789 911 Coils Coil 437 485 - -
Vimu1g00789 911 Coils Coil 280 307 - -
Vimu1g00789 911 SMART ring_2 859 897 IPR001841 -
Vimu1g00789 911 Coils Coil 614 690 - -
Vimu1g00789 911 CDD RING-HC_Bre1-like 851 907 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00789 Vimu-Chr1 5272180 5282161 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g00789 832 906 RAD5 or RAD16-like Gene Family AT5G05130 26.190 4.53e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00789 K10696 - gmx:100796610 1449.11