Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00788 ATGCGACGAGGGAGAGCCACCGCCGCTGTCGCCGCCGTCCATCCCTTGGCGGACCAGGAACCTCCCACCAAGGAGACGCGCTTCCGTGGCGTCAGGAAGCGTCCTTGGGGGCGATTCGCAGCGGAGATTAGAGATCCATGGAAAAAACAGCGCGTGTGGCTCGGTACCTTCGATTCAGCCGAGGATGCAGCACGGGCATACGACGCTGCGGCCCGATCCTTCCGCGGGCCCAAGGCGAAGACCAATTTTCCTTTCCCGAACCCCGACGCGGACCACTCGAACTCGCAGATTCCACTCTACCAGGCTCATGGGCTCTCCAAGTTCGATCAGGTCCAGGTGAACCGGCCCACCACCAGCGGCATGAGCAGCACAGTCGAGTCCTTCAGCGGGCCTAGGGTTCCTTCCTCCTCCACTCTTCACCCTCGCAAGCCCATCGTTAACCCTGTTGTCCCTCCTCTGGACGATTGTCATAGCGATTGCGACTCTTCTTCCTCCGTCGTCGAGGACGAGGACTGCGTCCTCACTTCCTCGTTCCGGCAACCACTCCCCTTTGATCTCAACCTCCCGCCCCCCAGCGCCGACGATGACATCCCGGCCACCGTGCTCTGCCTCTGA 615 0.6211 MRRGRATAAVAAVHPLADQEPPTKETRFRGVRKRPWGRFAAEIRDPWKKQRVWLGTFDSAEDAARAYDAAARSFRGPKAKTNFPFPNPDADHSNSQIPLYQAHGLSKFDQVQVNRPTTSGMSSTVESFSGPRVPSSSTLHPRKPIVNPVVPPLDDCHSDCDSSSSVVEDEDCVLTSSFRQPLPFDLNLPPPSADDDIPATVLCL 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00788 204 CDD AP2 26 84 IPR001471 GO:0003700|GO:0006355
Vimu1g00788 204 Gene3D AP2/ERF domain 26 85 IPR036955 GO:0003700|GO:0006355
Vimu1g00788 204 FunFam Ethylene-responsive transcription factor 2 26 85 - -
Vimu1g00788 204 PRINTS Ethylene responsive element binding protein signature 28 39 IPR001471 GO:0003700|GO:0006355
Vimu1g00788 204 PRINTS Ethylene responsive element binding protein signature 50 66 IPR001471 GO:0003700|GO:0006355
Vimu1g00788 204 MobiDBLite consensus disorder prediction 117 146 - -
Vimu1g00788 204 ProSiteProfiles AP2/ERF domain profile. 27 84 IPR001471 GO:0003700|GO:0006355
Vimu1g00788 204 MobiDBLite consensus disorder prediction 117 142 - -
Vimu1g00788 204 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 23 172 - -
Vimu1g00788 204 Pfam AP2 domain 26 76 IPR001471 GO:0003700|GO:0006355
Vimu1g00788 204 SMART rav1_2 27 90 IPR001471 GO:0003700|GO:0006355
Vimu1g00788 204 SUPERFAMILY DNA-binding domain 27 85 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00788 Vimu-Chr1 5267217 5267831 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g00788 1 190 AP2-EREBP Transcription Factor Family AT1G50640 50.962 6.56e-48 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vimu1g00788 AP2 1.5e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00788 K09286 - gmx:100795557 261.922