Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00786 ATGCCAGAAAACAGGCAGGTTCTCAGGAATGCTGATTCTACACCTTCTGGTGACAACATTGAAGGTGGTGCAGATTTTTCTGAAGCGATTCGTCGTTTGAAAATCAATGATAATTGGGACAGAGATGCTGCAGCTCAATCTACCCAATATCCAGATCGACCCGGTGAACCCGATTGCTTGTATTATTTGAGGACTGGAATGTGTGGTTATGGGAGTAACTGTCGCTACCATCACCCTGCCCATATTTCAATTGGTTCTCATTATGGTGAAGAACTCCCCCAGAGGACCGGGCAACCTGATTGTGAGTATTTTCTTAAGACAGGGACATGCAAATATGGATCAACATGTAAATACCATCATCCAAAGGACAGGCGTGGTGCTGCTCCTGTGTCATTCAATACTTTAGGTCTTCCAATGCGTCAGGAAGAAAAATCATGTCCCTATTACATGAGAACCGGGTCTTGTAAGTTTGGTGTTGCATGCAAGTTTCATCATCCACAACATGCTTCCATTGGAGCATATCCCTTGGTTGGATCTCCTACCTCAACAATTATCCCTACATCAGGTTTACCATATGCCGGAGGGTTTCCTGCATGGTCAGCAGTACCAAGAATGTCATATTTATCTGGGCAAGGTGTTCAATCTTATGTGCCACCTTTTCTCTCTTCTTCACAAGGCATTATACCCGTGCAGAGCTGGAACAACTACATGGGAAGTATGAACCCAACAATGCCTACTGGTTATCTTGGATCTAATCTTGTTTATGACTTCATGAATCTGGGGGAGTCACTTTTCGGCGGGCAGGCGATAAATTCAGCTCTCCCCAATCGACCTGATCAACCAGAATGTAGATACTTTATGAGCACTGGGACCTGCAAATATGGATCCGATTGCAAGTTCCACCATCCAAAGGAAAGAATATCTCAATCATTAATAAATCCACTTGGCCTTCCTGTGAGACCTGGGCAAGCTGTATGTTCTTACTACAGAATCTATGGAATGTGCAAATTTGGTCCAACATGCAAATTTGATCATCCAGTTTTGACTATCCCTCAGAACTATGGCTTGACCTCACCTGCTCTAGCACTTGATGCTCCTCTTATTAGTAACCAAAGAGGGTTGTCAAGTGTACAACCACCTGAGACATCTCCTTCTAAATTATCAAGTGACAACAAGCTTCAGCATTCTGATGCAAAAGCTGCCACAGAAGATTCATCCAAACAAGCTGATACTACACCAAATTCCTTCCCAGCCTCCTCAGAGCCTTTACATGACTAA 1278 0.4374 MPENRQVLRNADSTPSGDNIEGGADFSEAIRRLKINDNWDRDAAAQSTQYPDRPGEPDCLYYLRTGMCGYGSNCRYHHPAHISIGSHYGEELPQRTGQPDCEYFLKTGTCKYGSTCKYHHPKDRRGAAPVSFNTLGLPMRQEEKSCPYYMRTGSCKFGVACKFHHPQHASIGAYPLVGSPTSTIIPTSGLPYAGGFPAWSAVPRMSYLSGQGVQSYVPPFLSSSQGIIPVQSWNNYMGSMNPTMPTGYLGSNLVYDFMNLGESLFGGQAINSALPNRPDQPECRYFMSTGTCKYGSDCKFHHPKERISQSLINPLGLPVRPGQAVCSYYRIYGMCKFGPTCKFDHPVLTIPQNYGLTSPALALDAPLISNQRGLSSVQPPETSPSKLSSDNKLQHSDAKAATEDSSKQADTTPNSFPASSEPLHD 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00786 425 SUPERFAMILY CCCH zinc finger 99 124 IPR036855 GO:0046872
Vimu1g00786 425 SUPERFAMILY CCCH zinc finger 318 346 IPR036855 GO:0046872
Vimu1g00786 425 ProSiteProfiles Zinc finger C3H1-type profile. 140 168 IPR000571 GO:0046872
Vimu1g00786 425 ProSiteProfiles Zinc finger C3H1-type profile. 53 81 IPR000571 GO:0046872
Vimu1g00786 425 MobiDBLite consensus disorder prediction 372 391 - -
Vimu1g00786 425 SUPERFAMILY CCCH zinc finger 139 168 IPR036855 GO:0046872
Vimu1g00786 425 MobiDBLite consensus disorder prediction 372 425 - -
Vimu1g00786 425 Gene3D - 52 126 - -
Vimu1g00786 425 Gene3D - 273 354 - -
Vimu1g00786 425 ProSiteProfiles Zinc finger C3H1-type profile. 277 305 IPR000571 GO:0046872
Vimu1g00786 425 SUPERFAMILY CCCH zinc finger 281 306 IPR036855 GO:0046872
Vimu1g00786 425 ProSiteProfiles Zinc finger C3H1-type profile. 95 123 IPR000571 GO:0046872
Vimu1g00786 425 MobiDBLite consensus disorder prediction 405 419 - -
Vimu1g00786 425 SMART c3hfinal6 95 122 IPR000571 GO:0046872
Vimu1g00786 425 SMART c3hfinal6 320 347 IPR000571 GO:0046872
Vimu1g00786 425 SMART c3hfinal6 53 80 IPR000571 GO:0046872
Vimu1g00786 425 SMART c3hfinal6 142 167 IPR000571 GO:0046872
Vimu1g00786 425 SMART c3hfinal6 277 304 IPR000571 GO:0046872
Vimu1g00786 425 PANTHER PROTEIN PHOSPHATASE RELATED 39 380 - -
Vimu1g00786 425 SUPERFAMILY CCCH zinc finger 58 80 IPR036855 GO:0046872
Vimu1g00786 425 MobiDBLite consensus disorder prediction 1 25 - -
Vimu1g00786 425 ProSiteProfiles Zinc finger C3H1-type profile. 320 348 IPR000571 GO:0046872
Vimu1g00786 425 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 279 304 IPR000571 GO:0046872
Vimu1g00786 425 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 55 79 IPR000571 GO:0046872
Vimu1g00786 425 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 144 167 IPR000571 GO:0046872
Vimu1g00786 425 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 322 346 IPR000571 GO:0046872
Vimu1g00786 425 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 97 122 IPR000571 GO:0046872
Vimu1g00786 425 Gene3D - 127 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00786 Vimu-Chr1 5251204 5254976 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g00786 1 407 C3H Transcription Factor Family AT1G04990 47.826 2.10e-117 347
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vimu1g00786 zf-CCCH 4.2e-07 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00786 - - gmx:100812856 827.78