Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00785 ATGGACAGGTACAAATTAATTAAAGAAGTTGGTGATGGAACATTTGGGAGTGTTTGGAGAGCCATTAATAAGCAAAGGGGTGAAGTTGTTGCAATAAAGAAAATGAAGAAGAAATATTACTCTTGGGAGGAGTGTGTAAACTTGAGAGAAGTCAAGTCATTGCGAAAAATGAACCATCCAAATATTGTGAAGCTGAAGGAAGTTATTCGAGAATGTGACACTTTGTTTCTTGTTTTTGAGTATATGGAATACAACCTGTACCAACAAATGAAAAACAGGGAAAAACTGTTTTCTGAAAATGATGTCAGAAATTGGTGTTTTCAAGTTTTCCAAGGTTTAGCTTACATGCACCAGCGTGGATACTTTCACCGTGATCTGAAGCCAGCTGCAAAATTCTGCTGTCTTGACATGAGGGTATACTTCTTGTTGCAGAGAACTTGCTGGTCACCTAAGGATGTCATTAAGATTGCTGATTTTGGCCTAGTCCGAGATCAGTTCACAACCACCCTATACTGA 516 0.3837 MDRYKLIKEVGDGTFGSVWRAINKQRGEVVAIKKMKKKYYSWEECVNLREVKSLRKMNHPNIVKLKEVIRECDTLFLVFEYMEYNLYQQMKNREKLFSENDVRNWCFQVFQGLAYMHQRGYFHRDLKPAAKFCCLDMRVYFLLQRTCWSPKDVIKIADFGLVRDQFTTTLY 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00785 171 Gene3D Phosphorylase Kinase; domain 1 1 79 - -
Vimu1g00785 171 SUPERFAMILY Protein kinase-like (PK-like) 1 167 IPR011009 -
Vimu1g00785 171 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 3 166 - -
Vimu1g00785 171 FunFam cyclin-dependent kinase F-4-like 1 83 - -
Vimu1g00785 171 ProSitePatterns Protein kinases ATP-binding region signature. 10 34 IPR017441 GO:0005524
Vimu1g00785 171 ProSiteProfiles Protein kinase domain profile. 4 171 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g00785 171 Pfam Protein kinase domain 4 164 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g00785 171 Gene3D Transferase(Phosphotransferase) domain 1 80 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00785 Vimu-Chr1 5232353 5233408 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g00785 1 163 Core Cell Cycle Gene Families AT1G66750 33.735 4.09e-27 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_RCK Vimu1g00785 Pkinase 1.6e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00785 K08829 - gmx:100819558 267.7