Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00783 ATGGCCACCCCTACTAATCCTCCTTCTAACTTCTGTTTCCTCCTTCTATTGCTTCTACCACACTTTAATTTGGGCAAAAGCCAACTTCAGCTGAATTACTACTCTAAAAGCTGCCCGAAAGCAGAGGACATCATCAAGCAACAAGTCACACAACTATATCACAAGCATGGAAACACTGCCGTCTCATGGGTTAGAAATCTCTTCCACGATTGCGTCGTCCAGGTCAGGACTACGGCAAGCGACGGCACTTTAGTGTCGGAGCAGACATCGGAGAGAAGTATCGGTATGAGGAACTTTAAGTACGTAAACACCATCAAAGCCGCAGTTGAAGAAGAATGTCCCTTGACTGTGTCATGCGCTGACATTATTGCTCTTTCTGCTAGAGATGGCATTTCCTTGTTGGGTGGACCCAGCATTGAAATGAAGACAGGGCGAAAGGATAGCAAAGAAAGCTATGCAAAAGAGGTGGAAGACTTGATTCCAAACCACAATGATTCGATTTCCGTAGTGCTGTCTCGTTTTCAAGCCATTGGCATTGATGTTGAAGCCACAGTCGCTCTTTTAGGAGCTCACTCGGTAGGAAGAGTTCACTGCGTGAATCTTGTACACAGATTATATCCTACCGTGGACACAACACTTGATCCTGCACATGCTGAGTACCTGAAACGTCGGTGTCCAACACCGAATCCTGATCCAAAGGCTGTCTTGTATTCAAGGAATGACCTGAAAACGCCCATGATCATTGACAACAACTACTACAAGAACATCTTGGAACATAAGGGCCTTCTCCTTGTTGATGAACAGCTTGCCACTGACTCAAGAACAGCACCTTACGTCCAAAACATGGCTAATGACAATCAATATTTTCACCACCAGTTTTCAAGGGCCATTCAATTGTTATCTGAGACCAATCCTCTATCAGGGGATCAAGGAGAAATTAGAAAGGACTGTCGCTACCTCAATGTTGATTAA 972 0.4475 MATPTNPPSNFCFLLLLLLPHFNLGKSQLQLNYYSKSCPKAEDIIKQQVTQLYHKHGNTAVSWVRNLFHDCVVQVRTTASDGTLVSEQTSERSIGMRNFKYVNTIKAAVEEECPLTVSCADIIALSARDGISLLGGPSIEMKTGRKDSKESYAKEVEDLIPNHNDSISVVLSRFQAIGIDVEATVALLGAHSVGRVHCVNLVHRLYPTVDTTLDPAHAEYLKRRCPTPNPDPKAVLYSRNDLKTPMIIDNNYYKNILEHKGLLLVDEQLATDSRTAPYVQNMANDNQYFHHQFSRAIQLLSETNPLSGDQGEIRKDCRYLNVD 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00783 323 SUPERFAMILY Heme-dependent peroxidases 28 321 IPR010255 GO:0004601|GO:0006979|GO:0020037
Vimu1g00783 323 ProSiteProfiles Plant heme peroxidase family profile. 28 321 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vimu1g00783 323 PANTHER - 13 321 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu1g00783 323 Pfam Peroxidase 46 285 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vimu1g00783 323 FunFam Peroxidase 161 300 - -
Vimu1g00783 323 Gene3D - 32 318 - -
Vimu1g00783 323 PRINTS Haem peroxidase superfamily signature 60 74 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vimu1g00783 323 PRINTS Haem peroxidase superfamily signature 135 147 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vimu1g00783 323 PRINTS Haem peroxidase superfamily signature 183 198 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vimu1g00783 323 PRINTS Haem peroxidase superfamily signature 241 256 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vimu1g00783 323 PRINTS Haem peroxidase superfamily signature 117 134 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vimu1g00783 323 Gene3D Peroxidase, domain 2 162 301 - -
Vimu1g00783 323 CDD secretory_peroxidase 28 318 IPR033905 GO:0004601|GO:0042744
Vimu1g00783 323 FunFam Peroxidase 32 170 - -
Vimu1g00783 323 PRINTS Plant peroxidase signature 116 126 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu1g00783 323 PRINTS Plant peroxidase signature 239 254 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu1g00783 323 PRINTS Plant peroxidase signature 97 110 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu1g00783 323 PRINTS Plant peroxidase signature 135 150 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu1g00783 323 PRINTS Plant peroxidase signature 182 194 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu1g00783 323 PRINTS Plant peroxidase signature 38 57 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu1g00783 323 PRINTS Plant peroxidase signature 295 308 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu1g00783 323 PRINTS Plant peroxidase signature 62 82 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu1g00783 323 PRINTS Plant peroxidase signature 255 272 IPR000823 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00783 Vimu-Chr1 5190394 5191838 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g00783 31 321 Peroxidase AT2G37130 71.000 2.45e-162 452
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00783 K00430 - gmx:100811277 535.798