Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00778 ATGTGCCGCCAAATCCAGCTCACCATAACCGATCACACCCTCTCGCACACCACTGCTGTTGCCGGGGAAGATGTCTCCGACAAGCTTGACGGGGAGGATCTCTTCATTCCGCCTCTCAACTTCGCCATGGTTGATAATGGCATTTTCCGCTCTGGCTTCCCAGAACCTGCTAACTTCTCCTTCCTCCAAACCCTTGGCCTCCGTTCCATCATGTCTGTCTACTCATCTCAACCACTCTCTCTTATCTTTCTTTATTTTCTTTTTTGTTTTTCTCCAGTGTTGCTGTTACCTGTTTGTGTGTCTGTGTCTGTTTTTGAGTTTGATGATCCTTTTAGGATTGCTTTTGAGTACCCAATTGAGGAATTGGGAGTAAAGTCTCTTCCTTGCATGCTGTTGCTGATGGTTTGCTTGTTTGATTGGGTGTTTGTTAGATATTTGTGTCCCGAACCGTATCCGGAAGCCAACATGGAGTTCCTCAAGTCAAATGGGATCAAGCTTTATCATTTTGGGATCGAGGGTCATAAGGAACCTTTTGTGAACATCCCAGAGGACACAATCCGCGAAGCGCTGAAAGTTGTCCTTGATGTCAGGAATCACCCAGTTATAATTCACTGTAAGAGGGGAAAGCACCGAACGGGTTGTTTGGTAGGATGCTATAGAAAATTGCAGAAGTGGTGCTTGTCATCTGTGTTTGATGAGTACCAGCGCTTTGCAGCTGCGAAAGCAAGAGTTTCAGATCAGAGGTTTGTAGAGTTGTTTGATATTTCCAGCATGAAACATTTGCCTATAACCTTTTCATGTCTGAAGAGGTAA 813 0.4502 MCRQIQLTITDHTLSHTTAVAGEDVSDKLDGEDLFIPPLNFAMVDNGIFRSGFPEPANFSFLQTLGLRSIMSVYSSQPLSLIFLYFLFCFSPVLLLPVCVSVSVFEFDDPFRIAFEYPIEELGVKSLPCMLLLMVCLFDWVFVRYLCPEPYPEANMEFLKSNGIKLYHFGIEGHKEPFVNIPEDTIREALKVVLDVRNHPVIIHCKRGKHRTGCLVGCYRKLQKWCLSSVFDEYQRFAAAKARVSDQRFVELFDISSMKHLPITFSCLKR 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00778 270 CDD PFA-DSP_Siw14 34 254 - -
Vimu1g00778 270 Pfam Tyrosine phosphatase family 145 260 IPR004861 -
Vimu1g00778 270 Pfam Tyrosine phosphatase family 36 75 IPR004861 -
Vimu1g00778 270 FunFam Tyrosine phosphatase, putative 142 256 - -
Vimu1g00778 270 ProSitePatterns Tyrosine specific protein phosphatases active site. 203 213 IPR016130 GO:0016311|GO:0016791
Vimu1g00778 270 PANTHER TYROSINE-PROTEIN PHOSPHATASE 35 259 - -
Vimu1g00778 270 ProSiteProfiles Dual specificity protein phosphatase domain profile. 40 267 IPR020422 GO:0006470|GO:0008138
Vimu1g00778 270 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 145 255 IPR029021 -
Vimu1g00778 270 Gene3D Protein tyrosine phosphatase superfamily 34 257 IPR029021 -
Vimu1g00778 270 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 36 80 IPR029021 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00778 Vimu-Chr1 5123114 5126362 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g00778 7 71 Protein tyrosine phosphatase (PTP) family AT4G03960 53.846 6.29e-17 75.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00778 K18045 - gmx:100799968 277.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g00778 1 5123114 5126362 Vimu1g00778 1 5123114 5126362 ECH