Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00757 ATGTGTCTTTGGTCAATGATTTATTATACCATACCTCAATCACCAAGTACCTCAAACATGGTCTTCACTGTGCTTTCAGTAGCTCTCTGTTCACTGTTAGGCCTCCATTTTTTCACCATTTTTTCTTGTGCTGCCACCATTGATGAAAACCAAGTGAGGGAAGCAGGTGCTTTACTTGAGTGGAAAGCTAGCTTTGAAAACCAAAGCCAAGCTTCTCTGTCTTCATGGAGTGAAGGTGTGGATCATTGCAAGTGGAAAGAAATCATTTGTGACAAATCCAACTCTGTCACCACTATAAATGTAGCAAATCATGGCCTAAAAGGTACTCTTCATACTCTCAACTTCTCATCTTTTCCAAACCTGCTAACTCTAGATGTTAGTAACAACAGTTTCAGTGATACTATTCCTCAACAAATTGCTAACCTGTCCAGAGTTTCTGAGTTGATAATGAATAAAAACGATTTTAGTGGTCCAATCCCCATTTCCATGACCAAGTTGGCTAACTTGAAGATTCTAAACTTGAAAGAAAATAGCATTTCTGGCCCTCTTCCTGAAGAGATTGCAGAATTGAGGAACTTAGAGCGTCTGTTATTTGAATCAAATCATCTTTCTGGTACCATTCCTCCAACAATTGGAAGGATGGCCAACCTTGTCGAACTTAATCTGCAACTCAACTCTATCAATGGTACAATCCACCCTTCAATTAGAAACTTGACGAATTTAAAATTCCTCAGGCTCCAACAAAATATGCTCTCTGGCCCCATTCCACACTTCATAGGAGAGATGACCAATTTGCATGCTCTTGAACTCGATCAAAATAGAATTACAGGATCCATTCCTCCCAATATTGGAAACTTGACAAAGATGGTCAATATGTCCTTGGCCAAGAACATGCTTTCTGGACCAATTCCTCCCTCCCTTGGAAACTTGGTCAATCTAATGGCCTTAGAACTTTCCGGTAACAATCTTTCCGGAGTTGTTCCTCCCAGCATGGGAAATTTGACAAACCCCATCTATTTAGTTTTGACTAACAACAAACTTGAAGGCCGATTACCACCAGGAATGAATAACTTCACCAATTTAATAAGCTTACAACTAGCTGGAAATAGTTTCACTGGCCCTCTGCCCCAACAAATTTGCCTTGGTGGGTCACTAAACTATCTCAGTGCTGAAGGTAATCATTTCACGGGTCCAGTTCCAAAAAGCCTGAAAAATTGCTCCAGTCTTGTGAGACTCAGACTAGATGGAAACCGGTTGAGTGGAAATACATCAAATGATTTTGGTGTTTATCCATTGTTGAATCACATTGATCTGAGTGGGAATAATTTTTACGGCGACATTTCTCCAAATTGGGCAAAGTGTCCGAGTCTCTTAAGCCTTATAATGTCCAACAACAACTTAACCGGTAGTATACCACCAGAACTCAGCCGGGCACCCAATTTAACAGAACTTAACTTGTCTTCAAATCATTTAACTGGGAGAATTCCAAAAGAACTCGGGAAGCTGACATCTTTATTGAAGCTATCAGTAAGCAACAATGAACTTTCTGGCCCCATTCCTACAGAAATTGGTGATTTGTCGAACCTTGACACTCTGGAGCTTTCGGCAAATAATTTAGATGGTGCAATTCCAAAACAGTTGGCAGAGCTATTCAAGTTGATTCGCTTGAACTTGAGCAACAACAGATTGACAGAAAGCATTCCCTTGGAATTGGGTCGTTTGCAATCTCTTGAAAGCCTTGATCTTAGTATGAATTTGTTAAATGGAGAAATACCATCTTCACTTGCAAGTATGCAAAGTTTGGAAACGCTAAATCTCTCTCACAACAGTCTCTCTGGAGACATTCCATCTAATTTTAAGGATGGCTTGGCAAAGATTGACATATCTAACAACCAATTGGAGGGTCCAATTCCTAACAGTCGGGCCTTTCGCAATGTTTCATTTGATGCATTGAAAGGTAATAAAGGCTTGTGTGGAAATGTCCACGGTTTGGTGCCTTGCAGCAGTCGTAATGGTAAAGTGAAAAGAAATGTCACCACGTTGGCATTAGTCCTTGCTTTGGGTGCTCTACTTCTGGTAGTACTCGTGGTTGTAGTTTTGTTTTGTATTCGCTACAGAAGAACAATAACAGAAGGCAAAAAGGAGGATGCTAAAGAAGAAGAAACTCAGGAACATTATGCCATATGGAGTTATGATGGAAAATTAGTGTATGAAAATATCATTGAAGCCACAGAGAATTTTGATGACAAATATCTTATTGGTGTAGGAGGTTCTGCATCTGTTTATAGGGCTAAATTACCCACAGGACAGACTGTTGCTGTGAAAAAGATTCATGCTGCACCCGATGAAGAAACACCGGATTTAAAAGCTTTTATGACTGAGGTTAAAGCCTTGGCAGAAATCAAGCATCGTAACATTGTGAAGTCACTTGGATATTGTTTACATCCACGTTTCTCCTTTTTGGTTTATGAGTTCCTAGAGGGTGGTAGTTTGGATAGAGTACTCATGGATGATGTACGTGCAACAACGTTTGATTGGAACATGAGGGTAAAGGTTGTTAAAGGTGTCGCAAATGCTTTGTATCATATGCATCATGGTTGCTTTCCTCCTATCATTCATCGAGACATATCAAGCAAGAATGTTCTTATAGATTCGGAATACGAAGCAAAAATTTCTGACTTTGGAACAGCTAAAATTCTGAATCCTGATTCACGCAATTTAACAGCTTTTGCAGGCACATATGGGTATGCTGCACCAGAGCTTGCTTATACTATGGAAGTGAATGAAAAATGTGATGTGTTCAGTTTTGGAGTGCTTTGCTTTGAAATAATGATGGGAAAGCACCCAGGAGATCTCATTCCATCATTGTTTCCATCTTCTGAAACAACATCAGCGTATAATTTACTGTTGAAGGATATGTTAGACCAAAGACTACCCCTTCCAGAGAATCCAGTTGATGAGGAGGTGATTTTGATTGCCAAAGTAACATTTGCTTGCTTAAGTGAAACTCCACGTCTTCGTCCAAGCATGGAACAAGTGTATAACGATTTTGTGATGCCAAAATCATCTTCACTCAATTCACTCTCCATCGTCACACTTGCTCAACTTGTCAATAACTGA 3120 0.3984 MCLWSMIYYTIPQSPSTSNMVFTVLSVALCSLLGLHFFTIFSCAATIDENQVREAGALLEWKASFENQSQASLSSWSEGVDHCKWKEIICDKSNSVTTINVANHGLKGTLHTLNFSSFPNLLTLDVSNNSFSDTIPQQIANLSRVSELIMNKNDFSGPIPISMTKLANLKILNLKENSISGPLPEEIAELRNLERLLFESNHLSGTIPPTIGRMANLVELNLQLNSINGTIHPSIRNLTNLKFLRLQQNMLSGPIPHFIGEMTNLHALELDQNRITGSIPPNIGNLTKMVNMSLAKNMLSGPIPPSLGNLVNLMALELSGNNLSGVVPPSMGNLTNPIYLVLTNNKLEGRLPPGMNNFTNLISLQLAGNSFTGPLPQQICLGGSLNYLSAEGNHFTGPVPKSLKNCSSLVRLRLDGNRLSGNTSNDFGVYPLLNHIDLSGNNFYGDISPNWAKCPSLLSLIMSNNNLTGSIPPELSRAPNLTELNLSSNHLTGRIPKELGKLTSLLKLSVSNNELSGPIPTEIGDLSNLDTLELSANNLDGAIPKQLAELFKLIRLNLSNNRLTESIPLELGRLQSLESLDLSMNLLNGEIPSSLASMQSLETLNLSHNSLSGDIPSNFKDGLAKIDISNNQLEGPIPNSRAFRNVSFDALKGNKGLCGNVHGLVPCSSRNGKVKRNVTTLALVLALGALLLVVLVVVVLFCIRYRRTITEGKKEDAKEEETQEHYAIWSYDGKLVYENIIEATENFDDKYLIGVGGSASVYRAKLPTGQTVAVKKIHAAPDEETPDLKAFMTEVKALAEIKHRNIVKSLGYCLHPRFSFLVYEFLEGGSLDRVLMDDVRATTFDWNMRVKVVKGVANALYHMHHGCFPPIIHRDISSKNVLIDSEYEAKISDFGTAKILNPDSRNLTAFAGTYGYAAPELAYTMEVNEKCDVFSFGVLCFEIMMGKHPGDLIPSLFPSSETTSAYNLLLKDMLDQRLPLPENPVDEEVILIAKVTFACLSETPRLRPSMEQVYNDFVMPKSSSLNSLSIVTLAQLVNN 1039
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00757 1039 ProSiteProfiles Protein kinase domain profile. 747 1018 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g00757 1039 ProSitePatterns Protein kinases ATP-binding region signature. 753 776 IPR017441 GO:0005524
Vimu1g00757 1039 FunFam MDIS1-interacting receptor like kinase 2 826 1023 - -
Vimu1g00757 1039 PANTHER LEUCINE RICH REPEAT KINASE 2 316 1023 - -
Vimu1g00757 1039 Pfam Leucine rich repeat 432 491 IPR001611 GO:0005515
Vimu1g00757 1039 SUPERFAMILY RNI-like 327 635 - -
Vimu1g00757 1039 FunFam Leucine-rich receptor-like protein kinase family protein 255 353 - -
Vimu1g00757 1039 ProSiteProfiles Leucine-rich repeat profile. 480 503 IPR001611 GO:0005515
Vimu1g00757 1039 SUPERFAMILY L domain-like 90 421 - -
Vimu1g00757 1039 ProSitePatterns Tyrosine protein kinases specific active-site signature. 871 883 IPR008266 GO:0004672|GO:0006468
Vimu1g00757 1039 FunFam Leucine-rich repeat receptor protein kinase MSP1 710 825 - -
Vimu1g00757 1039 Gene3D Ribonuclease Inhibitor 358 670 IPR032675 -
Vimu1g00757 1039 FunFam Nuclear pore complex protein NUP107 51 209 - -
Vimu1g00757 1039 PRINTS Leucine-rich repeat signature 598 611 - -
Vimu1g00757 1039 PRINTS Leucine-rich repeat signature 313 326 - -
Vimu1g00757 1039 Gene3D Phosphorylase Kinase; domain 1 707 825 - -
Vimu1g00757 1039 Pfam Leucine Rich Repeat 600 620 IPR001611 GO:0005515
Vimu1g00757 1039 Gene3D Transferase(Phosphotransferase) domain 1 826 1028 - -
Vimu1g00757 1039 Pfam Protein kinase domain 749 1015 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g00757 1039 SMART LRR_typ_2 118 142 IPR003591 -
Vimu1g00757 1039 SMART LRR_typ_2 262 286 IPR003591 -
Vimu1g00757 1039 SMART LRR_typ_2 310 334 IPR003591 -
Vimu1g00757 1039 SMART LRR_typ_2 479 502 IPR003591 -
Vimu1g00757 1039 SMART LRR_typ_2 550 574 IPR003591 -
Vimu1g00757 1039 SMART LRR_typ_2 190 214 IPR003591 -
Vimu1g00757 1039 SMART LRR_typ_2 358 382 IPR003591 -
Vimu1g00757 1039 SMART LRR_typ_2 454 478 IPR003591 -
Vimu1g00757 1039 SMART LRR_typ_2 598 621 IPR003591 -
Vimu1g00757 1039 Pfam Leucine rich repeat N-terminal domain 54 91 IPR013210 -
Vimu1g00757 1039 SUPERFAMILY Protein kinase-like (PK-like) 729 1017 IPR011009 -
Vimu1g00757 1039 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 358 671 - -
Vimu1g00757 1039 Gene3D Ribonuclease Inhibitor 51 214 IPR032675 -
Vimu1g00757 1039 Gene3D Ribonuclease Inhibitor 290 357 IPR032675 -
Vimu1g00757 1039 Gene3D Ribonuclease Inhibitor 215 289 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00757 Vimu-Chr1 4929560 4932859 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g00757 40 919 Receptor kinase-like Gene Family AT4G08850 44.831 0.0 741
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vimu1g00757 Pkinase 7.6e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00757 - - vra:106762950 1907.11