Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00755 ATGACGCAGAAAGATCTTGCACACAAATCATTTGGCTTATCTGGAGCTTACCATAAATCGAAGACCGAACTATTGCTAAAGCACAGTTACAATCTTAACCGACCAGTTTCAATTGACCGACCGATTGCTAAAGCAATTACTAAAGCTGTTAAATCTCAACCGACCGGTCTCAATATATCTCTGATATTATATCTGTTGCAGATTACTAAAGCGATTGCTAAAGCGGTGGCATCTCAACCGACCGGTCTCAGTTATATCTTTCAGATTATTAAAACAGGTTTGGATTCAAAAGCAGGACCAGGCGCCATGTCCGTCACTTTCAGGACGCAATGTCCCGGACGCAATGTCCCCCCGGGCGCCATGCCCGTCACTTTCAGGACGCAATGTCCCGGACGCAATGTCCCACCGGGCGACAAGCCCGCCACTTTACGGACACAACGTCCCACCGGGCGACAAGCCCGCCACTTTGCGGACACAACGTCCCACCGGGCGACAAGCCCGCCACTTTGCGGACACAACGTCCCACCGGGCGACAAGCCCGCCACTTTGCGGACACAACGTCCCACCGGGCGACAAGCCCGCCACTTTACGGACACAACGTCCCACCGGGCGACAAGCCCGCCACTTTGCGGACACAACGTCCCACCGGGCGACAAGCCCGCCACTTTACGGACACAACGTCCCACCGGGCGACAAGCCCGCCACTTTGCGGACACAACGTCCCACCGGGCGACAAGCCCGGCATTTTCAGGACACAACGTCCCACCGGGCGACAAGCCCTCCGACCGGCACAACAATGCGGCAAAGATACACCGAGCGCCAACAAAACTAAGTCCTTCGGTCAGGCAGGAAGCAAACCCCTCCCTTTCCCTCGGACTTGGGGGGGATGATGTACGGTGGTGTATCCTCAAAGTCAAACGAGTTATTGGGCTCGAAGCCCAGCACCAGAATAAAAGGATCCCCAGGTACCTCCCCCCTCCGGTCAAGACTTGGAGATCACCGGCCGGTCGCAGCGGATACCAGCCGGACGGTCCTGAAGAAGAAGAAGCAGACGGAAGAGCAGAAAGTGACGTGATCAAGCATAAAATTGCAAAGTTGGAGATGATGAACTCTTCATTAACGACACTGTTTTTTGCTGCATGCTATTTTTCAAGCAAACAGCATTCGAGTAATGGACCCTACATGAGGGTCTATTCCTCGGAAGTTTCTGGTGTATCTTTATCCAACGGTAATGTTACGTTTGGCTATGATGCTGTCGAAGATGAAAACATTGAAGCAAGTGCTCTATTGAAGTGGAAAGCCAGCCTTGATAACCAAAGCCAGGTTTCCTTGTCTTCTTGGTCTACTTTCACTACCCCTTGCAAGTGGAAGGGAATAGTTTGTGATGAGTCCAACTCTGTCAGCACTATAAATCTTGAAAACTTTGGACTACAAGGTACACTTCTCAATCTAAACTTGTCATCCTTTCCTAAGCTTCTGAGGTTGTATTTAAGTTACAACAACCTCAGTGGACCTATTCCTTGTCAAATTGGTAACATGTCCAAAATTTGTGTGTTGAAAATGAACCATAATTGTTTTAGTGATTCCATCCCCCTGACAATTGGAATGTTGACAAATCTTGTTACACTTGATTTATCATCCAACGTTCTCTCTGGTACAATCCCTTCGCTTAGAAACTTAACAAATTTAGAACAACTTATCCTCTTCAGCAACCTTCTCTCTGGTCCTATTCCTGAGGATTTGGGAGGACTTCATCATCTCAGAACAGTCAAATTGTTAGATAATCAGATTTCTGGGTCAATCCCTTCTTCCATAGGAGACCTGGCTAATTTGATGAAACTTCAGCTCACTCGAAATAAACTACACGGGTCAATTCCTTCCTCTCTTGGAAACTTGACAAAACTCATTGAATTGTCCATGTCTGAAAACAAGCTTTCTGGATCAATTCCTGCTTCCATAGGAAACTTGGTCTATCTAGAAAGGCTTAACCTTGCACAAAACAAACTTTCTGGACATATTCCCTCTACCTTCAGAAATTTGACTAAGCTTACCTTTCTATTACTTCATGTAAACAAACTTACCGGAAGTTTCTCAATAGCAACAAGTAACCTGACCAATTTAGTAACTTTACAACTAAGCTCTAATCATTTCACTGGTCCTTTGCCACAATATATTTGCCTTGGAGGGTCACTTCTATATTTCGCAGCCAATGACAATCGTTTGACTGGTCCAATTCCATCAAGTTTGAAGAACTGCTCTAGTCTTAGAAGGCTCAATCTTGCAAAAAATATGTTGATGGGAAATATTCCAAATGATTTTGGTGTGTATCCAAATTTGAAATACATTGATCTGAGTAGAAATGCCTTCAACGGCCACCTTTCATCAAATTGGGTCAAATGTCATAATCTCATAGGCCTAATTATCTCATACAACAGATTATTCGGTGGTATACCCCCAGAGTTAGGTCAGGCACCTAAATTACAAAAGCTTGAACTTTCTTCAAATCGTCTAACAGGAAAGATTCCAAAAGAACTTGGGAACTTGACCCAATTGTTTCAACTCTCCATAAGTAATAACAATCTTTCAGGCAACATTCCCATTGAAATTGGTTCCTTAAACCAACTTCGGATCTTTGATCTTGCAACAAACAATTTAAGCGGTCCAATCCCAAAACAGCTCGGCGGGTTGCTCAAGTTAAATCACTTGAACTTAAGCCATAACAATTTCACGGAAAGCATTCCATCTGAATTTAGCCAATTGCAACATCTTCGAGAACTTGATCTTAGTTGGAATTCTTTGAGTGGAAAAATTCCAGCAACACTCGGAAAATTGAAGATGTTGGAAAACTTGAACCTCTCCCACAACAATCTCAGTGGAAACATTTCTGCCAGTTTTAAGAATATGTTCAGTTTGACAGATGTTGACATATCTAACAACCAATTAGAGGGTCCAATTCCTAACAATCGGGCCTTTCTTAATGCTCCATTTCAAGCACTGCAAAACAACAAAAACTTGTGTGGCCATGCTTCTGGGCTGATGCCTTGCCCGCAGCTATTGAGCCACAATCCTAATAATATCAAGAGCATGATGTTTTTACTTTTCCTTGCTTTGGGTGCACTATTTGTGGTTGGAGTTTCACTATATATTCATTGGCAAAAAGCAAGAAAAAAGAAAAAACAAGAGAAAGAAGAACAAAATCGAGATCTTTTTTCTATATTGCATTATGATGGGAAAATAGTGCATGAAACCATCATCGAAGCAACAAATAATTTCGATGAAAAACATCTCATCGGAAAAGGAGGGTTTGGAGGTGTTTACAAGGCCATCTTACCCTCTGGCCAGATTGTTGCAGTGAAGAAGCTTCAGGTTGAAGTTGACAGGGAAATGGTTGATTTTAAGGCTTTTACATCTGAAGTTCGAACCTTGACAGAAATCAAACATCGTAACATTGTGAAGTTGCATGGGTTTTGTGAACACCCACGCTATTGTTTCTTGGTTTATGAGTTCGTAGAAGGTGGCAGCTTGGATAAAGTACTAAACAGCGAAACACATGCAGCAATGTTTGATTGGAATAAGAGGGTTAACGTTGTCAAAGGAGTGGCAAATGCTTTGTATCATATGCACCATGGTTGCTCTCCTCCTATTGTTCATCGTGACATATCAAGCAAGAACGTTCTTATAGATTTGGAATATGAAGCTCGCTTATCTGACTTTGGAACAGCAAAAATTCTAAACCCTAATTCACGTAATTTAACTTCGTTTGCAGGCACTTATGGATATGCTGCACCAGAGCTTGCTTATACAATGGAAGTGAATGAGAAATGTGATGTGTTCAGTTTTGGGGTGCTTTGTTTGGAAATAATAATGGGAAATCACCCAGGAGATCTGATTTCTTTGATGCATTCACCATCTTCAACATCAGTAACAGCTAATTTGCTATTGAAGGATGTGATGGACCAACGACTACCTCTTCCAGTGATGCCAGTTGTTAAGGAGGTGGTCATCATTGCAAAAGTGGCATTTGCTTGTTTGAATGAAAGACCACTTTCTCGTCCAACCATGGAAGATGTTTATAACAAGTTTGTGATGCCTAAGTCACCTTTAACGAGGGAAACACTCAACACCATTGTACTTGGACAACTTCAGAATGATTGA 4155 0.4313 MTQKDLAHKSFGLSGAYHKSKTELLLKHSYNLNRPVSIDRPIAKAITKAVKSQPTGLNISLILYLLQITKAIAKAVASQPTGLSYIFQIIKTGLDSKAGPGAMSVTFRTQCPGRNVPPGAMPVTFRTQCPGRNVPPGDKPATLRTQRPTGRQARHFADTTSHRATSPPLCGHNVPPGDKPATLRTQRPTGRQARHFTDTTSHRATSPPLCGHNVPPGDKPATLRTQRPTGRQARHFADTTSHRATSPAFSGHNVPPGDKPSDRHNNAAKIHRAPTKLSPSVRQEANPSLSLGLGGDDVRWCILKVKRVIGLEAQHQNKRIPRYLPPPVKTWRSPAGRSGYQPDGPEEEEADGRAESDVIKHKIAKLEMMNSSLTTLFFAACYFSSKQHSSNGPYMRVYSSEVSGVSLSNGNVTFGYDAVEDENIEASALLKWKASLDNQSQVSLSSWSTFTTPCKWKGIVCDESNSVSTINLENFGLQGTLLNLNLSSFPKLLRLYLSYNNLSGPIPCQIGNMSKICVLKMNHNCFSDSIPLTIGMLTNLVTLDLSSNVLSGTIPSLRNLTNLEQLILFSNLLSGPIPEDLGGLHHLRTVKLLDNQISGSIPSSIGDLANLMKLQLTRNKLHGSIPSSLGNLTKLIELSMSENKLSGSIPASIGNLVYLERLNLAQNKLSGHIPSTFRNLTKLTFLLLHVNKLTGSFSIATSNLTNLVTLQLSSNHFTGPLPQYICLGGSLLYFAANDNRLTGPIPSSLKNCSSLRRLNLAKNMLMGNIPNDFGVYPNLKYIDLSRNAFNGHLSSNWVKCHNLIGLIISYNRLFGGIPPELGQAPKLQKLELSSNRLTGKIPKELGNLTQLFQLSISNNNLSGNIPIEIGSLNQLRIFDLATNNLSGPIPKQLGGLLKLNHLNLSHNNFTESIPSEFSQLQHLRELDLSWNSLSGKIPATLGKLKMLENLNLSHNNLSGNISASFKNMFSLTDVDISNNQLEGPIPNNRAFLNAPFQALQNNKNLCGHASGLMPCPQLLSHNPNNIKSMMFLLFLALGALFVVGVSLYIHWQKARKKKKQEKEEQNRDLFSILHYDGKIVHETIIEATNNFDEKHLIGKGGFGGVYKAILPSGQIVAVKKLQVEVDREMVDFKAFTSEVRTLTEIKHRNIVKLHGFCEHPRYCFLVYEFVEGGSLDKVLNSETHAAMFDWNKRVNVVKGVANALYHMHHGCSPPIVHRDISSKNVLIDLEYEARLSDFGTAKILNPNSRNLTSFAGTYGYAAPELAYTMEVNEKCDVFSFGVLCLEIIMGNHPGDLISLMHSPSSTSVTANLLLKDVMDQRLPLPVMPVVKEVVIIAKVAFACLNERPLSRPTMEDVYNKFVMPKSPLTRETLNTIVLGQLQND 1384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00755 1384 ProSitePatterns Tyrosine protein kinases specific active-site signature. 1215 1227 IPR008266 GO:0004672|GO:0006468
Vimu1g00755 1384 FunFam Nuclear pore complex protein NUP107 422 579 - -
Vimu1g00755 1384 Gene3D Ribonuclease Inhibitor 696 1017 IPR032675 -
Vimu1g00755 1384 ProSiteProfiles Leucine-rich repeat profile. 539 561 IPR001611 GO:0005515
Vimu1g00755 1384 MobiDBLite consensus disorder prediction 145 167 - -
Vimu1g00755 1384 FunFam Leucine-rich repeat receptor protein kinase EMS1 604 700 - -
Vimu1g00755 1384 Pfam Leucine rich repeat N-terminal domain 425 462 IPR013210 -
Vimu1g00755 1384 Pfam Leucine Rich Repeat 947 968 IPR001611 GO:0005515
Vimu1g00755 1384 Gene3D Transferase(Phosphotransferase) domain 1 1170 1371 - -
Vimu1g00755 1384 ProSitePatterns Protein kinases ATP-binding region signature. 1097 1120 IPR017441 GO:0005524
Vimu1g00755 1384 SMART LRR_sd22_2 824 850 - -
Vimu1g00755 1384 SMART LRR_sd22_2 656 682 - -
Vimu1g00755 1384 SMART LRR_sd22_2 920 952 - -
Vimu1g00755 1384 SMART LRR_sd22_2 537 562 - -
Vimu1g00755 1384 MobiDBLite consensus disorder prediction 185 207 - -
Vimu1g00755 1384 ProSiteProfiles Leucine-rich repeat profile. 898 920 IPR001611 GO:0005515
Vimu1g00755 1384 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 702 1019 - -
Vimu1g00755 1384 FunFam Leucine-rich repeat receptor protein kinase MSP1 1054 1169 - -
Vimu1g00755 1384 ProSiteProfiles Protein kinase domain profile. 1091 1362 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g00755 1384 Pfam Protein kinase domain 1092 1359 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g00755 1384 Pfam Leucine rich repeat 874 933 IPR001611 GO:0005515
Vimu1g00755 1384 Pfam Leucine rich repeat 806 861 IPR001611 GO:0005515
Vimu1g00755 1384 Pfam Leucine rich repeat 610 669 IPR001611 GO:0005515
Vimu1g00755 1384 SUPERFAMILY Protein kinase-like (PK-like) 1078 1360 IPR011009 -
Vimu1g00755 1384 PANTHER LEUCINE RICH REPEAT KINASE 2 653 1367 - -
Vimu1g00755 1384 FunFam MDIS1-interacting receptor like kinase 2 1170 1367 - -
Vimu1g00755 1384 SUPERFAMILY RNI-like 470 790 - -
Vimu1g00755 1384 MobiDBLite consensus disorder prediction 125 266 - -
Vimu1g00755 1384 Gene3D Ribonuclease Inhibitor 581 695 IPR032675 -
Vimu1g00755 1384 SUPERFAMILY L domain-like 703 1030 - -
Vimu1g00755 1384 MobiDBLite consensus disorder prediction 225 248 - -
Vimu1g00755 1384 SMART LRR_typ_2 704 728 IPR003591 -
Vimu1g00755 1384 SMART LRR_typ_2 608 632 IPR003591 -
Vimu1g00755 1384 SMART LRR_typ_2 537 559 IPR003591 -
Vimu1g00755 1384 SMART LRR_typ_2 656 679 IPR003591 -
Vimu1g00755 1384 SMART LRR_typ_2 920 943 IPR003591 -
Vimu1g00755 1384 SMART LRR_typ_2 560 584 IPR003591 -
Vimu1g00755 1384 SMART LRR_typ_2 848 872 IPR003591 -
Vimu1g00755 1384 SMART LRR_typ_2 896 919 IPR003591 -
Vimu1g00755 1384 SMART LRR_typ_2 944 967 IPR003591 -
Vimu1g00755 1384 Gene3D Ribonuclease Inhibitor 422 580 IPR032675 -
Vimu1g00755 1384 Gene3D Phosphorylase Kinase; domain 1 1050 1169 - -
Vimu1g00755 1384 MobiDBLite consensus disorder prediction 321 355 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00755 Vimu-Chr1 4910911 4916837 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g00755 425 1263 Receptor kinase-like Gene Family AT4G08850 43.819 0.0 685
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vimu1g00755 Pkinase 3.6e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00755 - - gmx:100800924 1455.65