Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00750 ATGGCCACCGGGGTGTGGCCCGTAGCCGCCGTAACACTGGTGCTCCTCCTCTGTTCCTCCATCCCAAAATCTGAATCCCAACAAGCGTACGTCGACAACAAACAACTAGATTGCCACAGAAACGACACCAACGCAACACATGGCAACCTCTGCAACAGTGTTCCATCATGCGCATCCTACCTCACCTTCAAATCTTCCCTCCCAGATTACACCACCTCTATTTCCATCTCTTACCTCCTCAATTCCAGCACCCCCGCCATGGCCGCCGCAAACAACATCACAGATGTTCAATCCATCCCCGCCGACACCCTCATCACCGTTCCCATCAACTGCTCCTGCTCCGGCCTCTATTATCAGCACAACGCCTCTTACAACATCAAAATACAGGGCGAAACTTACTTCTCCATCGCCAACAACACATACCAGTCCCTCACCACGTGTCAGGCTCTCATGGCCCAAAACACCTACGGCGAACGTGACCTCGTTGCGGGTCTCGACCTCCACGTGCCTCTAAGGTGCGCCTGCCCCACCCAGAAACAGAGCGAAGCAGGATTCAAGTACTTACTCACTTACTTGGTTTCTCAAGGAGAAACGGTTTCTTCCATCGCTGAAATCTTTGGTATTGACGAACAGAGCATCCTCGAAGCAAACGAGCTTTCTGATACCTCCTTTATTTTCTACTTCACGCCGATTTCAGTTCCTTTAAAAACAGAGCCGCCAACGAATTTACTGAGAACAGCGGCTCCCCCGAACGACTCCCCGTCACCGCCGCCTCCGGCGGCGGAGGATGACTCGGACTCTTCCAAGAAATGGGTCATTATCGGAATCGTGGTTGGGGTTGTTGTGCTGCTTCTTGTCTGCGCTGCTCTATTTTTCTTCTGTTTCTATAGGCAGCGACGGGTAAAACAGCCATCGCCGACTCCGGCAGCGAAGGCTTTCTCAGGCCCCACCCACAAACAGAGCGAAGAAATGACTCTTCCGACGTCGCAGTCGTGGTCTCTTTCTTCGGAAGGGATTCGTTACGCGATCGAGTCGTTGAGCGTGTACAAGTTTGAGGAGTTGCAGACGGCGACAGGGTTGTTCAGTGAAGAGAACAAAATCAAGGGTTCTGTTTATAGGGCTTCTTTCAAGGGTGATTATGCTGCGGTTAAGATTCTCAAAGGGGATGTGTCGGGTGAGATCAACATTCTCAAGAGGATTAACCACTTCAATGTTATAAGATTGTCGGGTTTTTGTGTTCACAAAGGTGACACCTATCTAGTGTACGAGTTTGCCGAGAATGATTCTCTCGAAAATTGGCTGCATAGTGATATTAAGAAGTACGAGAATTCGGTGTCTCTGAGTTGGGTGCAGAGGGTTCATATTGCTCATGATGTTGCTGACGCGCTTAATTACCTTCATAACTATACCAGTCCTCCTCATGTGCATAAGAATTTGAAGAGTGGGAACGTGCTGTTAGATGGGAATTTCAGGGCAAAGGTTTCGAATTTTGGGTTGGCGAGAACGGTGGAGGGTGAAGGGGATGACGGGGGATTTCAATTGACAAGGCATGTGGTCGGTACTCAAGGGTACATGTCACCTGAGTACATTGAGAATGGTTTGATTACTCCAAAGATGGATGTTTTTTCGTTTGGAGTTGTGCTTTTGGAGCTTCTTTCGGGGAGAGAGGCTGTTGGTGGGGTTAAGAATGGATCAGGGGAGCAGATGCTGTCGGTGACTGTGAATCAGGTGCTTGAAGGAGAGAACGTTAGAGAGAAACTTCGAGGTTTCATGGATCCTAATCTGAGAGATGAATATCCTTTGGAACTGGCTTATTCCATGGCTGAACTTGCCAAACGCTGTGTTGCTCGTGACCTCAATGCAAGACCACAGATTTCTGAGGTTTTCATGACTTTGTCCAAGATTCAATCCTCTACGATGGATTGGGATCCCTCTGATGAGCTTGAACGGTCTAGATCCGTCAGCCAAATTTCTGATAGCAGATAG 1986 0.4904 MATGVWPVAAVTLVLLLCSSIPKSESQQAYVDNKQLDCHRNDTNATHGNLCNSVPSCASYLTFKSSLPDYTTSISISYLLNSSTPAMAAANNITDVQSIPADTLITVPINCSCSGLYYQHNASYNIKIQGETYFSIANNTYQSLTTCQALMAQNTYGERDLVAGLDLHVPLRCACPTQKQSEAGFKYLLTYLVSQGETVSSIAEIFGIDEQSILEANELSDTSFIFYFTPISVPLKTEPPTNLLRTAAPPNDSPSPPPPAAEDDSDSSKKWVIIGIVVGVVVLLLVCAALFFFCFYRQRRVKQPSPTPAAKAFSGPTHKQSEEMTLPTSQSWSLSSEGIRYAIESLSVYKFEELQTATGLFSEENKIKGSVYRASFKGDYAAVKILKGDVSGEINILKRINHFNVIRLSGFCVHKGDTYLVYEFAENDSLENWLHSDIKKYENSVSLSWVQRVHIAHDVADALNYLHNYTSPPHVHKNLKSGNVLLDGNFRAKVSNFGLARTVEGEGDDGGFQLTRHVVGTQGYMSPEYIENGLITPKMDVFSFGVVLLELLSGREAVGGVKNGSGEQMLSVTVNQVLEGENVREKLRGFMDPNLRDEYPLELAYSMAELAKRCVARDLNARPQISEVFMTLSKIQSSTMDWDPSDELERSRSVSQISDSR 661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00750 661 Gene3D LysM domain 189 244 IPR036779 -
Vimu1g00750 661 MobiDBLite consensus disorder prediction 643 661 - -
Vimu1g00750 661 MobiDBLite consensus disorder prediction 239 266 - -
Vimu1g00750 661 CDD LysM 190 226 IPR018392 -
Vimu1g00750 661 SUPERFAMILY Protein kinase-like (PK-like) 335 629 IPR011009 -
Vimu1g00750 661 FunFam PTI1-like tyrosine-protein kinase 3 425 646 - -
Vimu1g00750 661 Pfam Protein kinase domain 389 628 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g00750 661 SMART LysM_2 190 234 IPR018392 -
Vimu1g00750 661 Gene3D Phosphorylase Kinase; domain 1 326 424 - -
Vimu1g00750 661 SUPERFAMILY LysM domain 189 234 IPR036779 -
Vimu1g00750 661 MobiDBLite consensus disorder prediction 640 661 - -
Vimu1g00750 661 ProSiteProfiles Protein kinase domain profile. 357 635 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g00750 661 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 11 645 - -
Vimu1g00750 661 Pfam LysM domain 191 234 IPR018392 -
Vimu1g00750 661 MobiDBLite consensus disorder prediction 305 329 - -
Vimu1g00750 661 Gene3D Transferase(Phosphotransferase) domain 1 425 655 - -
Vimu1g00750 661 ProSiteProfiles LysM domain profile. 189 233 IPR018392 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00750 Vimu-Chr1 4868980 4870965 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g00750 1 654 Receptor kinase-like Gene Family AT2G33580 53.235 0.0 636
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Vimu1g00750 Pkinase 2e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00750 - - gmx:100818534 1007.28