Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00746 TGGGGACTAGGAACAACTGATCCAAGCCAAAGAGGTAGAGCTAGATATACAGCTAGTGCTTACTTTGTAACTATGATAGGGTTTGGAGGGAACAGTTGCAGTGAGCTTTCTGAGATGGACATGATGAACATGGAAACTAATAGGAAGTTTCTTTCCCTGCCTCTTAGTAACAATTCTGGTGCTCAAATGCGCACTGATAGAAGAGTACCTGTCGCTACCAACAGCATCGCTCAGGATCATCACTACACCCACCACAACCCCACCGACACTTGCAGTGTGAGGGATAAAATCATGGCACATCCTCTTTTTCCTCGTCTCTTGTCGTCTTACCTCAATTGCCTAAAGGTTGGAGCACCTCCTGAAGTGGTGGCTAGCTTAGAGGAGTCATGTGCCAAATGTGAATCAATCAATGCATCATCAGGAAGGACAGGAAGTGGTTCTATAGGTGAAGATCCAGCCCTGGACCAGTTCATGGAGGCCTACTGTGAGATGCTTATTAAGTATGAGCAAGAGCTTACGAAACCCTTTAAAGAAGCCATGCTTTTTTTCTCAAGAATTGAGTGTCAGCTCAAAGCCCTAGCAGTTTCATCAGATTTTGGTCAAAGTGAATCATCATCACAGAATGAGGTTGATGTGCATGAAAACAACCTAGACAGTCAAGCTGAAGATCGGGAACTGAAAGTCCAGCTTCTGCGCAAGTATAGTGGATATCTAGGGAGCCTGAAGAAGGAATTTTTGAAGAAGAAAAAGAATGGAAAGTTGCCAAAGGAAGCACGACAGCAACTGCTTGATTGGTGGAACCGGCATTACAAGTGGCCCTACCCTTCGGAATCCCAAAAGCAGGCACTGGCAGAATCCACAGGCCTAGATTTGAAACAGATCAACAACTGGTTCATCAATCAGAGAAAACGTCATTGGAAGCCTTCTGAAGATATGCAGTTTGCGGTGATGGATGCAACTAACTACTACATGGAAAATGTTATGTGCAAGCCATTTCCAATGGATGGCATGCCCATGCTTCTTTAA 1026 0.4464 WGLGTTDPSQRGRARYTASAYFVTMIGFGGNSCSELSEMDMMNMETNRKFLSLPLSNNSGAQMRTDRRVPVATNSIAQDHHYTHHNPTDTCSVRDKIMAHPLFPRLLSSYLNCLKVGAPPEVVASLEESCAKCESINASSGRTGSGSIGEDPALDQFMEAYCEMLIKYEQELTKPFKEAMLFFSRIECQLKALAVSSDFGQSESSSQNEVDVHENNLDSQAEDRELKVQLLRKYSGYLGSLKKEFLKKKKNGKLPKEARQQLLDWWNRHYKWPYPSESQKQALAESTGLDLKQINNWFINQRKRHWKPSEDMQFAVMDATNYYMENVMCKPFPMDGMPMLL 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00746 341 ProSiteProfiles ELK domain profile. 225 245 IPR005539 GO:0003677
Vimu1g00746 341 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 141 315 - -
Vimu1g00746 341 Pfam KNOX2 domain 147 193 IPR005541 GO:0003677|GO:0005634
Vimu1g00746 341 SMART ELK_2 225 246 IPR005539 GO:0003677
Vimu1g00746 341 SUPERFAMILY Homeodomain-like 247 319 IPR009057 -
Vimu1g00746 341 Pfam ELK domain 225 246 IPR005539 GO:0003677
Vimu1g00746 341 Pfam KNOX1 domain 93 134 IPR005540 GO:0003677|GO:0005634
Vimu1g00746 341 ProSitePatterns 'Homeobox' domain signature. 283 306 IPR017970 GO:0000981|GO:0006355
Vimu1g00746 341 ProSiteProfiles 'Homeobox' domain profile. 245 308 IPR001356 GO:0003677
Vimu1g00746 341 CDD homeodomain 257 309 IPR001356 GO:0003677
Vimu1g00746 341 SMART KNOX1_2 91 135 IPR005540 GO:0003677|GO:0005634
Vimu1g00746 341 SMART KNOX2_2 144 195 IPR005541 GO:0003677|GO:0005634
Vimu1g00746 341 Gene3D - 243 316 - -
Vimu1g00746 341 SMART HOX_1 247 312 IPR001356 GO:0003677
Vimu1g00746 341 Pfam Homeobox KN domain 265 304 IPR008422 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00746 Vimu-Chr1 4845051 4848791 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g00746 93 335 Homeobox Transcription Factor Family AT1G62360 68.872 4.65e-111 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Vimu1g00746 KNOX2 4.7e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00746 - - gmx:100791704 585.489