Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00738 ATGGAGAACAGATTCAGATTATTAGTTTTCTTCATGTTATGGGCTTCTATGGTGCATAGTGCAGAATCCGAGTGTAAGAGGGATTGTGATTTAGCTCTAGCTTCCTACAATCTAACAGGAGGTGACTTGACATATCTATCAAAGCTTATGAAATCTGAGGTTGTTTCAAAACCTGAAGATATTCTCCCCTACAACAGTGAAACCATAAAAAACAAAGACCAGGTGCAAGCCTTTACCAGAGTGAACGTTCCATTCCCTTGCGATTGCATTGGAGATTTTCTAGGTCATATATTCAAATATGACGTTGTATCAGGTGACACTTACATGTCCATTGCCACTCAGAATTATTCCGATTTGACCACTGTTCAGTTGTTGCAGAGCTTCAACTCGTATTCACCAACTGGTCTTCCTGATACTGCGACTCTTGATGTCTTCGTTAACTGTTCCTGTGGGAATAGTGACATTTCCAAGGATTATGGATTGTTCATCACATACCCTCTTAGACCTGAGGATTCTTTGCAGTCAATTGCGAACGAGACTGGGATAGAGAGTGACTTGCTGCTTAAGTACAACCCGGGTGTAAATTTTAGCCAAGGGAGTGGTTTGGTTTATATTCCAGGGAAAGTTGAGCCTCCGAATTGCTTATCCTGTGTTTGGAAATATGTTCACCAGAGAACAAATCACGTTAAATGGGTAAATGATGCAAAAGCTGCAACTGATGGCTTCTGTCTTGAAGTGAAAAATCATGTTCATAACTTAGTTATCGCTGGAATATCTGCTGGAGTAGTAACGGCACTTCTGCTATTGGCATTTTGTGGGTATGTTACATATTACCGAAGAAAGAAGGTATGGAAGAGGAAGTTGCTCACAGATGAATTCATGATGAACTCCGCCAGAGTTATGAATGATGAAGCCTCTGGTGTTCCCGATGCAGAAATTGGTACCAACACCATTAGGGTGGACAATTCAGCAGAGTTTTCATATGAAGAACTAGCCAATGCTACAAATAACTTCAGTCTGGCTAACAAAATTGGTCAAGGTGGTTTTGGAGAAGTCTATTACGCAGAGCTTAATGGAGAGAAAGCTGCAGTTAAAAAGATGGACATGCAAGCAACAAGAGAATTTCTAGCTGAACTGAAAGTATTGACACGTGTTCATCACTTGAACCTGGTGAGTTTGATTGGATATTGTATTGAAAGCTCCCTTTTCCTTGTTTATGAATACATTGAGAATGGCAACTTGGGACAACATCTACGTAGATCAGTTCAAATTGCTCTGGATTCTGCCAGAGGTCTACAGTACATTCATGAGCATACTGTGCCTGTATATATCCATCGCGACATAAAGTCAGAAAACATTTTGATAGACAGAAAGTTATGTGCCAAGGTTGCAGACTTTGGTTTAACCAAGTTGATTGATGTTGGAAGTTCATCACTTCTCACAGCTAACATGAAGGGCACATTTGGTTACATGCCACCAGAGTACGCATATGGCAACGTTTCTCCCAAAATCGATGTCTATGCTTTTGGTGTTGTTCTTTATGAACTAATTTCTGCTAAAGAAGCATTGATCACGGGTGGTGTACATGGTGCTCAATTGAAGGGCCTTGTGTCTTTGTTTGATGCAGCTTTTGATCAGCAAGATCCCACAGAAGGTCTTAAGAAACTGGTGGATCCTAGGTTAGGAGATAACTACCCAATTGATTCAGTTTGCAAGATGGCACTACTTGCCAAAGCATGCACAGAGAGTGATCCACAACAACGTCCAAATATGAGTTCTGTTGTGGTTACTCTCACAGCACTTACTTCAAATAGTGAGGATTGGGATATTGCTTCCATCATTGAAAATCCAGCTCTAGCAAATCTAATGTCTGGAAAATAG 1881 0.4067 MENRFRLLVFFMLWASMVHSAESECKRDCDLALASYNLTGGDLTYLSKLMKSEVVSKPEDILPYNSETIKNKDQVQAFTRVNVPFPCDCIGDFLGHIFKYDVVSGDTYMSIATQNYSDLTTVQLLQSFNSYSPTGLPDTATLDVFVNCSCGNSDISKDYGLFITYPLRPEDSLQSIANETGIESDLLLKYNPGVNFSQGSGLVYIPGKVEPPNCLSCVWKYVHQRTNHVKWVNDAKAATDGFCLEVKNHVHNLVIAGISAGVVTALLLLAFCGYVTYYRRKKVWKRKLLTDEFMMNSARVMNDEASGVPDAEIGTNTIRVDNSAEFSYEELANATNNFSLANKIGQGGFGEVYYAELNGEKAAVKKMDMQATREFLAELKVLTRVHHLNLVSLIGYCIESSLFLVYEYIENGNLGQHLRRSVQIALDSARGLQYIHEHTVPVYIHRDIKSENILIDRKLCAKVADFGLTKLIDVGSSSLLTANMKGTFGYMPPEYAYGNVSPKIDVYAFGVVLYELISAKEALITGGVHGAQLKGLVSLFDAAFDQQDPTEGLKKLVDPRLGDNYPIDSVCKMALLAKACTESDPQQRPNMSSVVVTLTALTSNSEDWDIASIIENPALANLMSGK 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00738 626 Gene3D Transferase(Phosphotransferase) domain 1 409 616 - -
Vimu1g00738 626 SUPERFAMILY Protein kinase-like (PK-like) 317 598 IPR011009 -
Vimu1g00738 626 FunFam LysM receptor kinase 2 317 408 - -
Vimu1g00738 626 Gene3D Phosphorylase Kinase; domain 1 310 408 - -
Vimu1g00738 626 Pfam LysM domain 100 135 IPR018392 -
Vimu1g00738 626 Pfam LysM domain 168 196 IPR018392 -
Vimu1g00738 626 ProSitePatterns Serine/Threonine protein kinases active-site signature. 443 455 IPR008271 GO:0004672|GO:0006468
Vimu1g00738 626 ProSitePatterns Protein kinases ATP-binding region signature. 344 366 IPR017441 GO:0005524
Vimu1g00738 626 SMART serkin_6 338 601 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g00738 626 ProSiteProfiles LysM domain profile. 163 211 IPR018392 -
Vimu1g00738 626 FunFam PTI1-like tyrosine-protein kinase 3 409 612 - -
Vimu1g00738 626 Pfam Protein tyrosine and serine/threonine kinase 340 597 IPR001245 GO:0004672|GO:0006468
Vimu1g00738 626 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 7 611 IPR044812 GO:0019199|GO:0045087
Vimu1g00738 626 ProSiteProfiles Protein kinase domain profile. 338 601 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00738 Vimu-Chr1 4776338 4780820 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g00738 1 626 Receptor kinase-like Gene Family AT3G21630 51.538 0.0 619
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Vimu1g00738 PK_Tyr_Ser-Thr 1.7e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00738 - K13429 gmx:100803042 927.546