Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00736 ATGGAATATGCTCAATATGGTGACGTCTCTCCAAAAGTAGATGTGTACGCTTTTGGAGTGGTTCTTTATGAACTGATTTCTGCAAAGAATGCTGTTCTGAAAACAGGTGAATGTGTTGCTGAATCCAAGGGTCTTGTAGCTTTGATTGCGCAACTTGGGAGAGCTTGTACAAGGGATAATCCACAACTACGCCCAAGTATGAGATCTATAGTTGTTGCTCTTATGACACTTTCATCTCCTACTGAGGATTTCGACGATGAAACTGCTTCCTACGAAAATCAAACTCTCATAAATCTACTGTCTGTAAGATGA 312 0.4038 MEYAQYGDVSPKVDVYAFGVVLYELISAKNAVLKTGECVAESKGLVALIAQLGRACTRDNPQLRPSMRSIVVALMTLSSPTEDFDDETASYENQTLINLLSVR 103
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00736 103 Gene3D Transferase(Phosphotransferase) domain 1 1 98 - -
Vimu1g00736 103 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 2 50 IPR044812 GO:0019199|GO:0045087
Vimu1g00736 103 SUPERFAMILY Protein kinase-like (PK-like) 2 80 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00736 Vimu-Chr1 4770521 4771186 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g00736 6 103 Receptor kinase-like Gene Family AT3G21630 45.802 1.79e-27 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Vimu1g00736 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00736 - K13429 vum:124840042 177.948