Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00707 ATGTCAGATGACATGCTCATTCATTTCTCGTCCAACTCTTCAAACCAATCCGATCATTCTCTGCCTACGAAGATTGCAAAGTTGGAAGCTCGTATGGTTGGTAAGGGTTCCTCAACCTCTTCTCAGCAACCAGGTTGGTCCTCTGTGTCTGTTCCTTCGGCTGGGAAATTTGTTCGAGCTGTTGAAAATTCGGCTGAAGCATCCACTTCAAGTGATTCTGATGATGATAATGGTGGGGCATTCTTGATACAAGCCAACACATCGAAGCGGCAAAAACTTCAAGAAGATGGCAACACTAGTGTTTTTGAAAGCGTTGAGGTTGTTACTGATGGAAGGCAAACTAGTTTGGATGCCGTGGAGACAAAAATGCACATTGAAACGAATAGAAAGAAACATGGTCGTGGAAGAGGGAGTTCTGGTTCGGGTAGAGGCCGGGGTTCCAGAGTTAATGATCAGACCAAAACACTAATTTCTTCTCCAACTGCTTTGGCTTCAAATGGTCAGATCGACAATGTATACCATAAAGGTGGCAAACCCAGTGATCAGTTTCATAGTGATAATTGTGTTTCATTAGAGGACGAGGTTGCATCTTTGCAAGCTAAAGTTGTTGCTTTGGAGGAGGAATTGCGGAAATCAAAGCAAGAAGCAGTTGATTATCAGAATCTTACTCAGCAACTAGAAAAGCCTTACCCCTGCAAATTAAGAAGGTTCTTTTCAGGATATAAACACAATGCCTCCAGTAAGCTTACTGTTGAAATGAAGGAGATGACTGATCATGAACAACAAATGAAGCCTAAGAGGATGAAAGTAATATCTGACTTACTGATATCCGTTTCAAAAGCCGAAAGACAAGAAGCAAGACTGAAAGTACGACAAGACTCGTTGAGACTTGGAAATGTTGGTGTAATCAGAGCTGGAACTGTCATATCTGAGACCTGGGAAGATGGTCAAGCTTTAAAGGATCTGAATGCCCAGCTTGAACTTGGGTATTATCTGTGCCTAAGTCCCTCATTGAGTAGTATGGGATGTCCGCCTTTGAGGGTGGGTTCTCCAAGTGATTGGTGTAAAGCTGGTTGCTTGTGTCTTAGGGGCAGTGCTATGGCTTTGAGGGTGGATTCCCTGAGTGCTGGTGTTGGAAACCCAAAGAATAGTTATACTCATCATTCTCTCATCCTCCTATTCATCCTCTCAAATAATGGGCTTGGGCCTACTATCCAATTGCCTGCTTGGGCTGCTATCAGCTGGGGTACCTATCTGATATTCAAATGGACATGTGTTTTGTTGTTGTCCTTCTCTGTTGAAGATAAGGGTGATGGGACAGATGCAGAGGCTGGATTGCCAGAAGATATTCTAATTCACGATGAAATTTACAAGTGTCGATTAGCTAGCCTTAAAAGACATGAAAATGTTCAGGAAGAGGAAATTGTTTTACGAGAGAGGGATCGGTATGAAATAGAGAAGGGGAGGTTAATTCGTGAGATGAAACGCATACGGGATGAAGATGGTTCACGGTTTAACAACTTTCAGATTCTAAATCATCGTTATGCCCTTCTTAACCTTCTTGGGAAGGGAGGATTCAGTGAGGTGTACAAGGCTTTCGATTTGGTGGACCATAGATACGTTGCTTGCAAACTTCATGGTTTAAATGCTCAATGGAGTGAAGAGAAGAAGCAGAGCTACATACGACATGCAATTCGGGAGTATAATATTCACAAGACTCTTGTACATCGTCACATTGTTCGTTTATGGGACATCTTTGAGATTGATCAGAACACGTTCTGCACCGTTCTAGAGTATTGTAGTGGGAAGGATCTTGATGCTGTTCTTAAAGCAACGCCTATATTATCTGAGAGGGAGGCTAAGCCTGGAAATGTTCTGTTTGATGAACTTGGTGTTGCCAAAGTGACTGATTTTGGTCTTAGTAAGATAGTGGAGGATGATGTTGGATCCCAAGGTATGGAACTTACATCCCAGGGAGCTGGAACATATTGGTATTTGCCTCCTGAATGCTTTGAGCTCAGCAAGACACCTCTTATATCATCAAAGGTTGATGTCTGGTCTGCTGGTATTTTGTATTATCAAATGCTCTTTGGCCGACGACCTTTCGGGCATCACCAAACCCAAGAGAGAATACTTCGTGAGGACACAATTATTAAGGCTCGGAAGGTTGACTTTCCTTCTAAACCTACCATTTCTAACGAGGCAAAGGAACTAGGAAGGTTGTGGTTTCCTTTGAAGACCTCAATGCATACACTTTCTTATATCCGGTTTGCTGATTTTATCCGAAGATGTCTAACATATAACCAGGCTGAGAGACCAGATGTGTTAACCATTGCTCAAGACCCATATCTCACTTTCTCAAAGAAGTAA 2370 0.4253 MSDDMLIHFSSNSSNQSDHSLPTKIAKLEARMVGKGSSTSSQQPGWSSVSVPSAGKFVRAVENSAEASTSSDSDDDNGGAFLIQANTSKRQKLQEDGNTSVFESVEVVTDGRQTSLDAVETKMHIETNRKKHGRGRGSSGSGRGRGSRVNDQTKTLISSPTALASNGQIDNVYHKGGKPSDQFHSDNCVSLEDEVASLQAKVVALEEELRKSKQEAVDYQNLTQQLEKPYPCKLRRFFSGYKHNASSKLTVEMKEMTDHEQQMKPKRMKVISDLLISVSKAERQEARLKVRQDSLRLGNVGVIRAGTVISETWEDGQALKDLNAQLELGYYLCLSPSLSSMGCPPLRVGSPSDWCKAGCLCLRGSAMALRVDSLSAGVGNPKNSYTHHSLILLFILSNNGLGPTIQLPAWAAISWGTYLIFKWTCVLLLSFSVEDKGDGTDAEAGLPEDILIHDEIYKCRLASLKRHENVQEEEIVLRERDRYEIEKGRLIREMKRIRDEDGSRFNNFQILNHRYALLNLLGKGGFSEVYKAFDLVDHRYVACKLHGLNAQWSEEKKQSYIRHAIREYNIHKTLVHRHIVRLWDIFEIDQNTFCTVLEYCSGKDLDAVLKATPILSEREAKPGNVLFDELGVAKVTDFGLSKIVEDDVGSQGMELTSQGAGTYWYLPPECFELSKTPLISSKVDVWSAGILYYQMLFGRRPFGHHQTQERILREDTIIKARKVDFPSKPTISNEAKELGRLWFPLKTSMHTLSYIRFADFIRRCLTYNQAERPDVLTIAQDPYLTFSKK 789
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00707 789 Gene3D Phosphorylase Kinase; domain 1 511 598 - -
Vimu1g00707 789 MobiDBLite consensus disorder prediction 63 80 - -
Vimu1g00707 789 Gene3D Transferase(Phosphotransferase) domain 1 599 789 - -
Vimu1g00707 789 Coils Coil 480 500 - -
Vimu1g00707 789 MobiDBLite consensus disorder prediction 1 22 - -
Vimu1g00707 789 MobiDBLite consensus disorder prediction 61 80 - -
Vimu1g00707 789 ProSitePatterns Protein kinases ATP-binding region signature. 521 544 IPR017441 GO:0005524
Vimu1g00707 789 PANTHER MIXED LINEAGE PROTEIN KINASE 10 621 - -
Vimu1g00707 789 MobiDBLite consensus disorder prediction 143 168 - -
Vimu1g00707 789 Pfam Protein kinase domain 620 784 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g00707 789 CDD STKc_TLK 514 783 - -
Vimu1g00707 789 MobiDBLite consensus disorder prediction 123 178 - -
Vimu1g00707 789 SUPERFAMILY Protein kinase-like (PK-like) 505 785 IPR011009 -
Vimu1g00707 789 ProSiteProfiles Protein kinase domain profile. 515 784 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g00707 789 Pfam Protein tyrosine and serine/threonine kinase 518 612 IPR001245 GO:0004672|GO:0006468
Vimu1g00707 789 Coils Coil 188 222 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00707 Vimu-Chr1 4535369 4543242 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g00707 505 738 EF-hand Containing Proteins AT2G17890 30.741 4.16e-18 86.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TLK Vimu1g00707 Pkinase 8.2e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00707 K08864 - gmx:100805168 613.609
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g00707 1 4535369 4543242 Vimu1g00707 1 4535369 4543242 ECH