Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00689 ATGGGAGAAGGAAGTGACCATCAAGCTATGGCGGATGATGAGAATGTTGAACATATTGGAGGTGGAGATAATAAGGCTGAAAACAACTCTGGCTCTCATGTTGAGGTTGGGGTTTCTGAGCCATATGTGGGTAGGGAGTTTGATTCTGAAAATGCTGCAAAGACTTTCTACAATGAGTATGCCAGACGAGTGGGTTTCAGCTGCAAAGCTGGTGCAAAGGGTCGTTCCAAAGCCGATGGGGAGAATATGCACTGCGAATTTGTCTGTGGCAGGGAGGATTTGAAAAGAAAGCTTGCTGACAGTTGCAATGCAATGATTAGGATAGAGAAGAAGGGCCAAAATAAGTGGGTTGTTACACAATTTGTAAAGGAGCATAGCCATTCCATGGCAAACCTTAGTAAGGTGCAGAGTATCAGGCCTCGCAAGCACTTTTCTAGTGTGGGAAGAACCATGCCTGAAACTTACCAAGGAGTGGGGCTTGTTCCAAGCGGTGTGATGTATGTATCTATGGATAAAAATGGCATTCCTACTAAGAATATTCACGGGATTAGGAATATTCCTGCCGTTGCTACTATTGCTGAAACAGTTCACCCGGTTAAAAGTCCGTCAATGATGAATTATGCTGTTAGGCCACCTATTCAAAGGAGGACATTAGGGAGGGATGCTCACAACCTGCTGGAGTACTTTAAGAAAATGCAAGCTGAGAACCCTGGTTTCTTCTATGCAATACAACTTGATGATGATAATCACATGTCTAATGTGTTTTGGGCAGATGCGAGATCAAGGACTGCTTATGGTCATTTTGGTGATACAGTTACTATGGACACAACTTACAGAATAAATCAATATAGAGTGCCCTTTGCTCTGTTCACCGGGGTAAACCATCATGGTCAGATGATTTTGTTTGGTTGTGCACTCCTCTTGGATGATTCTGAGGCTTCTTTTATCTGGCTCTTTAAGACATTTTTGACAGCAATGAATGACCGTTACCCTGTCTCTATCACTACCGATCAAGACAGAGCTATACAAACAGCAATTTCACAAGTTTTTCCTCAAACACGGCACTGTATAAGCAAATGGCATGTCTTGCGAGAAGGCCACGAGAAGTTGGCCTATGTGTGCAACATGCATCCAAATTTTCAGATTGAACTATATAATTGTATTAATCTAACAGAAACAGTTGAGGAGTTTGAGTCATCGTGGAATTTTATCATGAATAAATATGATCTCACAAAAAATGATTGGCTTCAGTCATTGTACAATGCTCGTGCACAATGGGTTCCAGCATATTTCCGTGATTCATTTTTTGCAGTAATATCTCCTAATCACGGAATTGATGGTTCTTTTTTTTATGGTTTTGCCAACCATCAGGCGACATTGCCAGTGTTCTTTAGGCAGTACGAACAAGCTTTAGAGAGCTGGTTTGAAAAAGAATTAGAAACAGATTACGAGACAATTTGCACCACCCCTGTCCCGAGGACACCTTCCCCAATGGAGAAGCAGGCTGCTAATCTCTATACTCGGAGAATATTTTCAAAGTTTCAAGAAGAGCTAGTGGAAACCTTTGCTTATACAGCCAACAGAATTGAAGAAGATGGAGAAAGTAGCATATTCAGGGTTGCAAAATTTGACGATGACCAAAAGGCTTATGTTGTCACATTAAACCTTTCTGAGTTGAGAGCTAACTGTAGTTGCCAAATGTTTGAGTATTCAGGCATTCTATGTAGACATGTTCTAACTGTTTTTACTGTGACTAATGTACTTACATTGCCATCTCATTATATTTTAAAACGGTGGACAAGAAATGCAAAAGTCAGTGCTGGATCAGTTGAACATGCTGGTGAATTGCATGTACATGAGTCTTTGGCATCACGATATAGCAATCTTTGTTGGGAAGCCATCAAATATGCTGAAGAAGGGGCAATGACTGTGGAAACACATGATACTGCAATTGGTGCTCTTCGAGAAAGTGCAAAAAAGATTTCTTTCATGAAGAGAAGTTTGGCCAAAGTTTCCCCACCCAGTCATCCCGTCACTGGGGCTGCTTATGATGATAGAAAATCCCCTACTTCAACCGCAGATACAAACCCTCTTCTGTGGCCACAGCAGGATGAAATAACGAAGAGGTTTAATCTTAATGATGCTAGTACTCCTGTTCAATCAGTTGCTGATCTAAATTTACCACGAATGACCCCAGTGTCTCTTCAGCGAGATGACGGTACACCTGAAAACATGGTATGTGAAGGAGAACCTCTTCCCCATTTTTTATATGGCATATTTGTGGGATTGGAACCGCATTCCAATGAATTGGTGGTTTATCCCTGTCTAAAATCATTGACATGGGTAATGGAGAACAAGACCTCAACACCAGGGAATAGAGTGGCTGTTATCAATCTTAAGCTTCCAGTTGCCGATACAAATACTGGTGTGTGTGAAGTCAAGTTTCAGGTGTCCAAGGAAACATTAGTTGCTGTACTGCGATCAATGGACTATATACGTGAGCAACTATCGGTTCCTGCTAAAATTTGGCAGGGCGATGCACAAACAGAAGCTGCTATATTGAAAAGACCTCGGAAGAACCGTTTGGAAGATCCTTACCTCTTCACCGGGGTGGAGTGGAGGAACGTTCTCCAAACGAATAACGAGTAG 2649 0.4183 MGEGSDHQAMADDENVEHIGGGDNKAENNSGSHVEVGVSEPYVGREFDSENAAKTFYNEYARRVGFSCKAGAKGRSKADGENMHCEFVCGREDLKRKLADSCNAMIRIEKKGQNKWVVTQFVKEHSHSMANLSKVQSIRPRKHFSSVGRTMPETYQGVGLVPSGVMYVSMDKNGIPTKNIHGIRNIPAVATIAETVHPVKSPSMMNYAVRPPIQRRTLGRDAHNLLEYFKKMQAENPGFFYAIQLDDDNHMSNVFWADARSRTAYGHFGDTVTMDTTYRINQYRVPFALFTGVNHHGQMILFGCALLLDDSEASFIWLFKTFLTAMNDRYPVSITTDQDRAIQTAISQVFPQTRHCISKWHVLREGHEKLAYVCNMHPNFQIELYNCINLTETVEEFESSWNFIMNKYDLTKNDWLQSLYNARAQWVPAYFRDSFFAVISPNHGIDGSFFYGFANHQATLPVFFRQYEQALESWFEKELETDYETICTTPVPRTPSPMEKQAANLYTRRIFSKFQEELVETFAYTANRIEEDGESSIFRVAKFDDDQKAYVVTLNLSELRANCSCQMFEYSGILCRHVLTVFTVTNVLTLPSHYILKRWTRNAKVSAGSVEHAGELHVHESLASRYSNLCWEAIKYAEEGAMTVETHDTAIGALRESAKKISFMKRSLAKVSPPSHPVTGAAYDDRKSPTSTADTNPLLWPQQDEITKRFNLNDASTPVQSVADLNLPRMTPVSLQRDDGTPENMVCEGEPLPHFLYGIFVGLEPHSNELVVYPCLKSLTWVMENKTSTPGNRVAVINLKLPVADTNTGVCEVKFQVSKETLVAVLRSMDYIREQLSVPAKIWQGDAQTEAAILKRPRKNRLEDPYLFTGVEWRNVLQTNNE 882
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00689 882 MobiDBLite consensus disorder prediction 1 21 - -
Vimu1g00689 882 Pfam MULE transposase domain 272 363 IPR018289 -
Vimu1g00689 882 Pfam SWIM zinc finger 550 584 IPR007527 GO:0008270
Vimu1g00689 882 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 26 662 IPR031052 GO:0006355
Vimu1g00689 882 MobiDBLite consensus disorder prediction 1 34 - -
Vimu1g00689 882 SMART 26again6 561 588 IPR006564 GO:0008270
Vimu1g00689 882 ProSiteProfiles Zinc finger SWIM-type profile. 550 586 IPR007527 GO:0008270
Vimu1g00689 882 MobiDBLite consensus disorder prediction 672 698 - -
Vimu1g00689 882 Pfam FAR1 DNA-binding domain 55 129 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00689 Vimu-Chr1 4410419 4414330 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vimu1g00689 MULE 1.5e-24 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00689 - - gmx:100807296 1377.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g00689 1 4410419 4414330 Vimu1g00689 1 4410419 4414330 ECH