Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00683 ATGGCAGGTAATCTACCAACAGCAACTGAAGGACGCCCCTTGAAATGTAAAGCTGCGATTTGCCGCAAGCCTGGCTCTCCACTGACTATTGAGGAGATCATTGTAGCACCTCCATTGCCTCGTGAAGCAAGGATTCGTGTTATATGCACCTCTCTCTGTCATACCGATGTTACATTTTGGAATATGCAGGATCCTTCTCCAAGAATCTTGGGTCATGAGGCTGTTGGGGTTGTGGAAAGTGTTGGAGAGGGTGTAACTGAACTTACAAAAGGAGATTTGGTTGTCCCAATTTTCTTAGCTGATTGTGGGGAGTGTTTAGATTGCAAATCAAGCAGGAGCAATCTTTGTTCAAATTTTCCTTTTCAATTCTCTCCTTGGATGCCTAGAGATGGCACATCAAGATTCAAGGATTCAAAAGGAGAGATCATACAGCATTTCATGTTTGTTTCTAGTTTTAGTGAGTACACTGTGATTGACACTGCCCATCTAACCAAGGTTGATCTACCAATACCACCCAAGCTGGCATGCCTACTTGGCTGTGGAATATCAACTGGAGTAGGTGCTGCTTGGAAATCTGCAGGTGTGGAGCCAGGCTCTACAGTAGCCATTTTTGGGCTGGGAAGTATTGGATTAGCTGTTGCCGAGGGAGCTAGAATCTGTGGAGCAACTAAGATTATAGGCGTGGATATCAACCCAGAGAAATATGAAGTTGGAAAAAAGTTTGGAGTCACTGACTTTGTCCATTCTGGAGAAAGTAAAGACAAAACTGTGAGCCAGCAGATAATCATGGAGATGACTGATGGGGGGGCAGACTATTGCTTCGAATGTGTTGGCAAGGCATCACTGATGGAAGATGCATACGCTTCAAGTAGAAGGGCTTGGGGAAAAACGGTAGTTGTAGGATTGGACAAGCCAGGATCCAAGTTGAGCCTTGACTGTGGTGAAGTACTGCTTAGTGAGAAGACCCTCAGGGGATGCTTATTTGGAGGACTCAAACCTAAGACTGATGTACCTACTCTCATGAAACGCTACTTGGATAAGGAACTGAATCTGGATGAGTTTGTCACACATGAGGTGCAGTTTCAGGATATCAACAAAGCTTTTGATTTGTTGATTGAAGGAAAGAGTCTCCGATGTGTGATTTGGATGGACAAGTGA 1158 0.4447 MAGNLPTATEGRPLKCKAAICRKPGSPLTIEEIIVAPPLPREARIRVICTSLCHTDVTFWNMQDPSPRILGHEAVGVVESVGEGVTELTKGDLVVPIFLADCGECLDCKSSRSNLCSNFPFQFSPWMPRDGTSRFKDSKGEIIQHFMFVSSFSEYTVIDTAHLTKVDLPIPPKLACLLGCGISTGVGAAWKSAGVEPGSTVAIFGLGSIGLAVAEGARICGATKIIGVDINPEKYEVGKKFGVTDFVHSGESKDKTVSQQIIMEMTDGGADYCFECVGKASLMEDAYASSRRAWGKTVVVGLDKPGSKLSLDCGEVLLSEKTLRGCLFGGLKPKTDVPTLMKRYLDKELNLDEFVTHEVQFQDINKAFDLLIEGKSLRCVIWMDK 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00683 385 Pfam Alcohol dehydrogenase GroES-like domain 41 165 IPR013154 -
Vimu1g00683 385 PANTHER ALCOHOL DEHYDROGENASE 12 381 - -
Vimu1g00683 385 FunFam S-(hydroxymethyl)glutathione dehydrogenase 185 326 - -
Vimu1g00683 385 FunFam Alcohol dehydrogenase 6 19 196 - -
Vimu1g00683 385 SUPERFAMILY GroES-like 334 382 IPR011032 -
Vimu1g00683 385 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 71 85 IPR002328 GO:0008270|GO:0016491
Vimu1g00683 385 Pfam Zinc-binding dehydrogenase 209 342 IPR013149 -
Vimu1g00683 385 Gene3D - 19 378 - -
Vimu1g00683 385 SUPERFAMILY GroES-like 9 191 IPR011032 -
Vimu1g00683 385 Gene3D - 185 326 - -
Vimu1g00683 385 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 170 346 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00683 Vimu-Chr1 4393795 4396863 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g00683 48 371 Monolignol Biosynthesis Gene Families AT2G21730 24.412 5.89e-10 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00683 K00121 - gmx:100806887 623.239
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g00683 1 4393795 4396863 Vimu1g00683 1 4393795 4396863 ECH