Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00673 TTATATCCTCATCTTCTCAGAACCATTGCTTTTCCAACAGCAGAAACATACTGCGCTTCCCTTCTTCTGAATTTGTTCTTCTACTCAGCTTGTTGCCCCTTTGCTCTTACTTCCAGTGGCACATTCTCTCATATAGTTGGAGTAGGAGCTACAAGGAAAGGCATGCAGGCTATCTGGTTGATGCTATTGTTGTTGGTGGACATTGCATTGGGGAATTCAGACATTGATGCTCTCCTTGAATTTAAGAAAAGCATTCAGAATGACCCTTCTGGATTAGTTTTTAATTCTTGGAATTCCAAGTCTTTAAATTCTGATGGATGTCCTAGGAACTGGTATGGAATATGGTGCAGTGAAGGCAGTGTTATATCAATCACTCTGGACAATGCTGGTTTGGTTGGTGACTTTAATTTCCATGCAATTCTTGGCCTTGCAATGCTTCGCAATTTGTCAGCTGTGAACAACCAGTTCACTGGAGAACTCTCACATGCTGCTGCAATGGAATCACTTGAATATCTTGATTTGTCCCTCAACAAGTTTAATGGACCGTTACTCTCTAACTTGGTTCAGTTGCGCAAGTTAGTATATCTGAATCTTTCTTCTAATGAACTTGGAGGCCCTCTTAGCGTAGAGTTTCACAAATTTGGGAAGTTGAAGTATTTAGATTTGCACATGAATAACTTTTCTGGGGATATAATGCACATCTTTTATCAGATGGGAAGTGTGCTGTATGTTGACTTGAGCAGCAACAGGTTCTCTGGTGCACTGGATTTGGGACTTGTAGATGAATCTTTTCTCTCCTCAATTCAATATTTAAATGTTAGCCATAATTCCTTGAGTGGTGAGTTATTTGTTCATGATGGTATGCCATATCTTGACAATTTAGAGGTGTTTGATGCTAGTAATAATCAGTTAGAGGGTAATATACCTTCCTTTACTTTTGTGGTATCTCTTCGGATCCTTCGACTTGCATTCAACCAGCTCACTGGTTTGCTGCCAGAAGCTTTATTGAAGGAAAATTCAATGATGTTGTCCGAACTGGATCTTAGTCAAAACAAGCTTGAAGGTCCCATTGGAATTATTACCTCGGTGACTCTGAGGAAGCTTAATTTATCTTCAAACAAGTTGTCTGGCTCCTTACCTTTGAGGGTAGGCCACTGTGCTGTCATAGATTTTAGTAATAACACACTATCAGGTAATTTCTCAAGGATTGGATATTGGGGTAACTATGTGGAAGTTGTTCAGTTAAGTACAAACACATTGATTGGAATGCTTGCAAATGAAACTTCTCAATTTTTAAGGTTAACTGAACTTAAGGCATCCAATAACTTGTTAGAGGGCTTTCTCCCACCGAATTTGGGAACATATCCAGAACTGAAGGAGATTGATCTTAGCCTAAACCAGCTTTCTGGGTTCCTCCTACCAAGCTTTTTTTACTCAACCAAATTGATTAATCTTAATCTCTCCAACAATAAGTTTTCTGGATCAATTCCAATTCAATTTCAACCTCCAAATACTCCTTTGGTTTCTACTGAAAATATTAGTCTGGTGTTTCTTGATCTTTCAAACAACAACTTGAGTGGGCCTCTTCCTTCAAATATGAGTAGGCTTCAAAATTTGGCATATCTCAATTTATGCAACAACAAATTGGAAGGTGTTATTCCTGATGACCTTCCAGATGAGTTGAGAGCATTAAATGTGTCCTTCAATAATTTTTCCGGTGTGGTACCTGAAAACTTACAGCATTTTCCCGAATCAGCATTTCATCCAGGAAATACTATGCTGGTGTTTCCTCATTCGCAATCATCACCAAAAGATGCTTCCAACCTAGGTTTGAGGGAACATCGGTTACATAGAAGGTCTGCCACTAGGATAGCCCTTATTGCATGTTTGGTTGCTGGTGCTTTTGTGATGGCTTTTGTGGGCATAATAGTTTACTATAAGGTTCATCATGAAAAAGAAAGGACTTCTAAACAAAATGAAGCTAGAGGTAGCACTCAAGAGGGTACTTTCACATCAAATATAGAGACAGTTTACAGAAATTTGGAAGCATTACCACCTTCTCAAAGGGGCTCTTCAGATGCTGCAAGAAACATTCATCCAGTGGGAGAGAAGCCTATGGGTCTTGGGCGTAGTGAATTAGGTAAAGACGAGGAAGAAATGTATTCCCCAATGTCTATTTTGTCACCTTCAAATCCTTCATCTTCTAAAAGCTACCAGTTTGAGAATCCTGATTCCCTCCAAGTATCATCTCCAGATAAACTGGTTGGAGACTTGCACATATTTGATGGGTCCTTGGTACTAACTGCCGAAGAACTTTCATGTGCTCCAGCAGAAGTTATTGGCAGGAGCTGTCATGGAACACTTTACAAAGCAACACTTGACTCTGGTCATTCATTGGCTGTCAAATGGTTAAGAGAAGGAATAACCAAAGGAAAAAAGGAGTTGGCAAGGGAAATAAAGAAACTTGGGACCATCAAGCATCCAAACCTGGTTTCTGTTCAGGGTTACTATCTGGGGCCAAAGGAACATGAGAAACTGATCATATCAAATTACATGAATGCACACTCTTTGGACATTTATCTCCATGAAGTAGATAAAGCAAATCTCGATCCTTTGACTCTTGATGAAAGGGTGAGGGTGGCTATAGAGGTGGCACTGTGTCTACATTTCTTACATGATGAGAAAGCTATACCTCATGGCAATCTCAAATCCACAAACATTTTGCTAGAAACTCCCAACAAAAATGTTCTCCTCACAGACTACAGCCTGCACAGGATACTCACTACTGCAGGTACTACCGAGCAAGTTCTGAATGCCGGCGCCCTCGGTTACCGGCCGCCGGAGTTTGCTAGATCTAGCAAACCATGCCCTTCCTTGACAAGTGATGTGTATGCATTTGGAGTGGTGTTGTTAGAACTCATAACAGGAAGAAATTCAGGAGAAATAGTTTCTGGGATTCCAGGGGTAGTTGACCTCACTGATTGGGTGAGGTTTTTGGCTGAACAAGAACGTTGGAGCCAATGCTTTGATAGGTTTCTTCTAGTGGAGAAACATAATGGGGAAAAACCCTCAAAAGTACTTGATGAAATGCTAAAGGTGGCTCTTAGATGCATCCTTCCAGCATCTGATAGGCCTAACATGAAAACAGTCTCTGATGATCTCTCAACAATAATAAGGTAG 3180 0.4038 LYPHLLRTIAFPTAETYCASLLLNLFFYSACCPFALTSSGTFSHIVGVGATRKGMQAIWLMLLLLVDIALGNSDIDALLEFKKSIQNDPSGLVFNSWNSKSLNSDGCPRNWYGIWCSEGSVISITLDNAGLVGDFNFHAILGLAMLRNLSAVNNQFTGELSHAAAMESLEYLDLSLNKFNGPLLSNLVQLRKLVYLNLSSNELGGPLSVEFHKFGKLKYLDLHMNNFSGDIMHIFYQMGSVLYVDLSSNRFSGALDLGLVDESFLSSIQYLNVSHNSLSGELFVHDGMPYLDNLEVFDASNNQLEGNIPSFTFVVSLRILRLAFNQLTGLLPEALLKENSMMLSELDLSQNKLEGPIGIITSVTLRKLNLSSNKLSGSLPLRVGHCAVIDFSNNTLSGNFSRIGYWGNYVEVVQLSTNTLIGMLANETSQFLRLTELKASNNLLEGFLPPNLGTYPELKEIDLSLNQLSGFLLPSFFYSTKLINLNLSNNKFSGSIPIQFQPPNTPLVSTENISLVFLDLSNNNLSGPLPSNMSRLQNLAYLNLCNNKLEGVIPDDLPDELRALNVSFNNFSGVVPENLQHFPESAFHPGNTMLVFPHSQSSPKDASNLGLREHRLHRRSATRIALIACLVAGAFVMAFVGIIVYYKVHHEKERTSKQNEARGSTQEGTFTSNIETVYRNLEALPPSQRGSSDAARNIHPVGEKPMGLGRSELGKDEEEMYSPMSILSPSNPSSSKSYQFENPDSLQVSSPDKLVGDLHIFDGSLVLTAEELSCAPAEVIGRSCHGTLYKATLDSGHSLAVKWLREGITKGKKELAREIKKLGTIKHPNLVSVQGYYLGPKEHEKLIISNYMNAHSLDIYLHEVDKANLDPLTLDERVRVAIEVALCLHFLHDEKAIPHGNLKSTNILLETPNKNVLLTDYSLHRILTTAGTTEQVLNAGALGYRPPEFARSSKPCPSLTSDVYAFGVVLLELITGRNSGEIVSGIPGVVDLTDWVRFLAEQERWSQCFDRFLLVEKHNGEKPSKVLDEMLKVALRCILPASDRPNMKTVSDDLSTIIR 1059
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00673 1059 FunFam Leucine-rich repeat receptor-like protein kinase 759 851 - -
Vimu1g00673 1059 Pfam Leucine rich repeat N-terminal domain 72 117 IPR013210 -
Vimu1g00673 1059 Pfam Protein tyrosine and serine/threonine kinase 778 1053 IPR001245 GO:0004672|GO:0006468
Vimu1g00673 1059 SUPERFAMILY L domain-like 409 582 - -
Vimu1g00673 1059 Gene3D Transferase(Phosphotransferase) domain 1 853 1059 - -
Vimu1g00673 1059 Gene3D Ribonuclease Inhibitor 410 511 IPR032675 -
Vimu1g00673 1059 Gene3D Ribonuclease Inhibitor 512 602 IPR032675 -
Vimu1g00673 1059 PANTHER OS07G0626500 PROTEIN 59 155 - -
Vimu1g00673 1059 Gene3D Ribonuclease Inhibitor 236 409 IPR032675 -
Vimu1g00673 1059 Gene3D Phosphorylase Kinase; domain 1 780 852 - -
Vimu1g00673 1059 ProSiteProfiles Protein kinase domain profile. 774 1059 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g00673 1059 SUPERFAMILY L domain-like 86 385 - -
Vimu1g00673 1059 MobiDBLite consensus disorder prediction 683 711 - -
Vimu1g00673 1059 SUPERFAMILY Protein kinase-like (PK-like) 777 1054 IPR011009 -
Vimu1g00673 1059 Gene3D Ribonuclease Inhibitor 71 235 IPR032675 -
Vimu1g00673 1059 MobiDBLite consensus disorder prediction 653 672 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00673 Vimu-Chr1 4336498 4340672 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g00673 291 587 Receptor kinase-like Gene Family AT3G51740 32.248 8.10e-28 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vimu1g00673 PK_Tyr_Ser-Thr 1.5e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00673 - - gmx:100809980 1712.58