Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00665 ATGTTTATGCAGGAGATGTCTTCGTTTGGGACAAATGGCACTGAGGATTCTCTGCCTCCGCCACCACCTGCTATCCCATCAGATGTAGTGCCTATCAAAATGGAGCCGGAGAAAAAGAAGGTCTTGAGGCTTCCAATAGCCAGGCGTGGCCTTGCTTCTAAAGGGATGAAGTTGCGACTTCTCACTAATCACTTTAGAGTGAATGTTGGAAACACTGACGGTCACTTTTTTCAGTATAGTGTATCTCTTTCTTATGAAGATGGACGTCCTGTAGAGGGTAAGGGCGTGGGAAGAAAGGTCCTTGACAGGGTTCAGGAGACCTATAATTCTGAATTAAATGGGAAGGATTTTGCCTATGATGGTGAAAAAACCCTTTTTACCCTTGGCTCTCTTGCTCGTAATCGCCTTGAGTTCACTGTCGTTCTCGAGGACGTTGTCTCTGCTGGCAGAAATAATGGAAATGCCAGCCCTGATGGACATGGAGAAATCAGTGAGAACGACAAGAAGAGAATGAGGCGCCCAAATAGAGCTAAAACTTTTAAAGTTGAGATTAATTTTGCTTCAAAGATTCCACTGCAAGCAATTGTCAATGCTCTCCGTGGACAAGATTCTGATAATTACCAGGAAGCAATAAGAGTTCTTGATATCATTCTGAGGCAGCACGCGGCTAAACAAGGCTGTCTGCTTGTGCGCCAGTCATTCTTCCATAATGATCCGAAGAATTTTGCTGATGTAGGAGGAGGTGTTCTTGGCTGTCGGGGATTTCATTCTAGTTTTAGAACCACCCAGAGTGGCTTGTCACTTAACATAGATGTCTCAACCACAATGATAGTTACCCCTGGGCCTGTGGTGGACTTCCTCATTTCCAATCAGAATGTAAAAGATCCGTTTTCTCTGGACTGGGTAAAGGCCAAGAGAACTCTTAAAAATTTGAGGATTAAAGCAAGTCCATCCAATCAAGAGTATAAAATTACCGGGCTTAGTGACCTCCCGTGCAAAGACCAGCTGTTTACATTAAAGAGAAAGGGTGGAGATGGTGATGATACTGAGGAGGTGACAGTGTATGATTACTTTGTTAATCGTCGAAACATAGATCTTCGCTACTCAGGTGATCTACCATGTATTAATGTTGGAAAGCCGAAGCGGCCAACATATATTCCCCTTGAGCTTTGCTCTTTGGTATCCCTTCAACGCTATACTAAAGCTCTAACCACACTCCAAAGATCCTCATTGGTGGAGAAATCTAGACAGAAGCCTCCGGAGAGAATGAGAGTGTTGACAGATGCTTTGAGTCGAAGTAATTATGGTTCTGAACCTATGCTTCGTAACTGTGGTATTTCTATCAACTCTGGCTTTACTGAAGTTGAAGGTCGTGTTTTACAAGCTCCAAGGTTAAAGTTTGGAAACGGCGAGGATTTTAATCCAAGAAATGGGAGGTGGAACTTCAATCAAAAGAAATTAGTTAGACCGGTAAAAATTGAAAAATGGGCTGTGGTTAACTTTTCTGCCCGATGTGATGTACGAGGACTTGTTAGGGATCTCATCAAGTGCGGTCAAATGAAAGGAATTACGATTGAACAACCTTTTGATGTCTTTGAAGAAGATTTTCGCAATAAACGATCCCCGCCTCTGGTTAGAGTGGAGAAAATGCTTGAGTTTGTGCAATCTAAACTCCCAGGGCCTCCACAATTTCTTCTTTGTCTTCTTCCTGATAGGAAAAATTCTGAACTATATGGTCCGTGGAAGAAGAGGAATCTTGCTGATTTTGGGATTGTTACACAGTGTATAGCACCTCAAAGGGTCAATGATCAGTATTTGACCAATGTTTTACTGAAGATCAATGCTAAGCTTGGAGGCCTGAATTCTATTTTAGGAGCTGAACATGCTCCTTCTATCCCAGTTGTTTCCAGAGCTCCCACCATTGTTATTGGCATGGACGTGTCTCATGGCTCCCCAGGGCAAACCGATATTCCTTCAATTGCAGCGGTGGTTAGCTCTCTGGAGTGGCCTTTAATATCAAAGTATAGAGCATGTGTCCGAACCCAGTCTCCGAAGGTTGAAATGATTGACAATTTGTTTAAGAAAGTCTCTGATGGGGTGGATGAAGGCATAATTAGGGATGGAGTCAGTGAGTCCCAGTTCAATCAAGTTTTAAATATCGAGCTCGATCAAATAATAGAGGCTTGCAAGTTTTTAGATGAGAAGTGGAATCCCAAATTTTTGGTTATTGTGGCTCAAAAGAACCACCATACCAAATTCTTTCAAGCAGATGCTCCCGACAATGTTCCTCCTGGAACTGTGATTGATAACAAAATTTGTCATCCTCGGAACTATGACTTTTACATGTGTGCACATGCTGGAATGATTGGTACTAGTAGGCCTACACATTATCATGTTCTGTTAGATGAGATTGGGTTTTCAGCTGATGATCTGCAGGAACTTGTGCACTCATTATCATACGTGTATCAGAGGAGCACCACTGCCATATCTGTTGTTGCTCCAATCTGCTATGCTCACTTGGCTGCTACTCAGATGGGGCAGTTTATGAAATTTGAGGAAAGATCGGAGACAGCTTCTAGTCATAGTGGTGCTCACCCTGTCCCTCAGTTGCCTAAATTGAATGATAATGTCTCTAGCTCTATGTTCTTTTGCTGA 2655 0.4279 MFMQEMSSFGTNGTEDSLPPPPPAIPSDVVPIKMEPEKKKVLRLPIARRGLASKGMKLRLLTNHFRVNVGNTDGHFFQYSVSLSYEDGRPVEGKGVGRKVLDRVQETYNSELNGKDFAYDGEKTLFTLGSLARNRLEFTVVLEDVVSAGRNNGNASPDGHGEISENDKKRMRRPNRAKTFKVEINFASKIPLQAIVNALRGQDSDNYQEAIRVLDIILRQHAAKQGCLLVRQSFFHNDPKNFADVGGGVLGCRGFHSSFRTTQSGLSLNIDVSTTMIVTPGPVVDFLISNQNVKDPFSLDWVKAKRTLKNLRIKASPSNQEYKITGLSDLPCKDQLFTLKRKGGDGDDTEEVTVYDYFVNRRNIDLRYSGDLPCINVGKPKRPTYIPLELCSLVSLQRYTKALTTLQRSSLVEKSRQKPPERMRVLTDALSRSNYGSEPMLRNCGISINSGFTEVEGRVLQAPRLKFGNGEDFNPRNGRWNFNQKKLVRPVKIEKWAVVNFSARCDVRGLVRDLIKCGQMKGITIEQPFDVFEEDFRNKRSPPLVRVEKMLEFVQSKLPGPPQFLLCLLPDRKNSELYGPWKKRNLADFGIVTQCIAPQRVNDQYLTNVLLKINAKLGGLNSILGAEHAPSIPVVSRAPTIVIGMDVSHGSPGQTDIPSIAAVVSSLEWPLISKYRACVRTQSPKVEMIDNLFKKVSDGVDEGIIRDGVSESQFNQVLNIELDQIIEACKFLDEKWNPKFLVIVAQKNHHTKFFQADAPDNVPPGTVIDNKICHPRNYDFYMCAHAGMIGTSRPTHYHVLLDEIGFSADDLQELVHSLSYVYQRSTTAISVVAPICYAHLAATQMGQFMKFEERSETASSHSGAHPVPQLPKLNDNVSSSMFFC 884
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00665 884 Gene3D - 459 625 - -
Vimu1g00665 884 ProSiteProfiles PAZ domain profile. 300 395 IPR003100 GO:0005515
Vimu1g00665 884 Pfam N-terminal domain of argonaute 58 218 IPR032474 -
Vimu1g00665 884 MobiDBLite consensus disorder prediction 1 15 - -
Vimu1g00665 884 Pfam Argonaute linker 2 domain 421 467 IPR032472 -
Vimu1g00665 884 Pfam Piwi domain 565 850 IPR003165 GO:0003676
Vimu1g00665 884 MobiDBLite consensus disorder prediction 1 22 - -
Vimu1g00665 884 SMART Piwi_a_2 564 850 IPR003165 GO:0003676
Vimu1g00665 884 FunFam Protein argonaute 7 275 399 - -
Vimu1g00665 884 Pfam PAZ domain 284 411 IPR003100 GO:0005515
Vimu1g00665 884 Pfam Argonaute linker 1 domain 230 277 IPR014811 -
Vimu1g00665 884 ProSiteProfiles Piwi domain profile. 564 850 IPR003165 GO:0003676
Vimu1g00665 884 SUPERFAMILY Ribonuclease H-like 548 848 IPR012337 -
Vimu1g00665 884 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 52 852 - -
Vimu1g00665 884 CDD PAZ_argonaute_like 280 394 - -
Vimu1g00665 884 Gene3D paz domain 274 399 - -
Vimu1g00665 884 Gene3D - 631 884 IPR036397 GO:0003676
Vimu1g00665 884 Pfam Mid domain of argonaute 474 527 IPR032473 -
Vimu1g00665 884 CDD Piwi_ago-like 439 844 IPR045246 -
Vimu1g00665 884 SMART DUF1785_2 228 280 IPR014811 -
Vimu1g00665 884 SUPERFAMILY PAZ domain 275 435 IPR036085 GO:0005515
Vimu1g00665 884 MobiDBLite consensus disorder prediction 151 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00665 Vimu-Chr1 4275394 4281986 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g00665 48 884 Eukaryotic Initiation Factors Gene Family AT5G43810 33.923 3.74e-152 471
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00665 K11593 - gmx:100779439 1556.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g00665 1 4275394 4281986 Vimu1g00665 1 4275394 4281986 ECH