Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00650 ATGGCTGGTCATTTGACCTCAAGGAGTGATGTATACAGTTTTGGAGTTGTGTTGTTAGAGTTACTAACAGGAAGGAGTGTAGTTGAAGATGAGAAACCTGGATTTTCAGAAGAAACACTGGTGGATTGGGCAAGGCCATTCCTGAGTGATAGCAGAAGAATTTGGAGAATCATGGACACAAGGTTAGGTGGTCAATACTCCAAGAGAGGAGCACAAGCAGCAGCAATACTTGCACTACGGTGTCTAAATACAGATCCAAAAAACAGACCAACTATGGTGAATGTGCTAGCAGAATTGGAAGCACTAAATTCCTCAAATTCATTCCCAAGGACCCCAAAATCTGGAACTGAGAATCATACAACAAAGCATTCTAGTCATTCCCAAAAATCAGCTACAAATAATAACAGACTATGA 414 0.4082 MAGHLTSRSDVYSFGVVLLELLTGRSVVEDEKPGFSEETLVDWARPFLSDSRRIWRIMDTRLGGQYSKRGAQAAAILALRCLNTDPKNRPTMVNVLAELEALNSSNSFPRTPKSGTENHTTKHSSHSQKSATNNNRL 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00650 137 Pfam Protein tyrosine and serine/threonine kinase 3 99 IPR001245 GO:0004672|GO:0006468
Vimu1g00650 137 Gene3D Transferase(Phosphotransferase) domain 1 1 129 - -
Vimu1g00650 137 ProSiteProfiles Protein kinase domain profile. 1 102 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g00650 137 MobiDBLite consensus disorder prediction 104 137 - -
Vimu1g00650 137 SUPERFAMILY Protein kinase-like (PK-like) 4 113 IPR011009 -
Vimu1g00650 137 PANTHER OS01G0588500 PROTEIN-RELATED 1 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00650 Vimu-Chr1 4163981 4168189 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g00650 1 114 Receptor kinase-like Gene Family AT3G58690 44.531 4.12e-23 91.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vimu1g00650 PK_Tyr_Ser-Thr 3.7e-06 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00650 - - pvu:PHAVU_008G205600g 239.58