Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00649 ATGGCTATTGCAGCTCCAGGGCAATTGAACGTTAATGAATCGCCCACTTGTGGATCCAGAAGCGTCGATTGCTTCGAGAAACTGGAGCAAATTGGCGAAGGAACATATGGTCAGGTTTACATGGCTAAAGAGATCAAAACTGGTGAAATTGTTGCTCTGAAGAAAATACGTATGGACAATGAGAGAGAGGGGTTTCCTATAACTGCTATACGAGAAATCAAAATTCTTAAGAAACTACATCATGAAAATGTGATCAAGCTGAAAGAAATTGTGACTTCTCCAGATGGTAACAAATATAGAGGTGGCATCTATATGGTCTTTGAATACATGGACCATGATTTAACAGGCCTTGCTGACCGACCTGGGATGAGATTTACAGTTCCCCAAATTAAGTGTTACATGAGACAACTGTTGACGGGGCTTCACTATTGTCATGTAAATCAAGTACTCCATCGTGATATCAAAGGCTCAAATCTTCTTATAGACAATGAGGGAAACCTTAAGCTTGCAGATTTTGGACTAGCACGATCATTTTCTAATGACCAAAATGCTAATCTTACAAATCGTGTCATTACATTATGGTACAGACCTCCTGAGTTGCTGCTTGGGACAACAAAGTATGGGCCCGCTGTAGATATGTGGTCAGTTGGGTGCATTTTTGCTGAGCTTCTTCAAGGGAAGCCTATCTTTCCTGGAAAAGATGAGCCAGAACAATTAAATAAAATATATGAGCTGTGTGGAGCACCAACTGAAATCAACTGGCCTGGGGTTTCTAAGATACCTTATTATAATAAATTTATGCCAACAAGGCCAATGAAAAGACGTTTGAGGGAAGTTTTCCGGCATTTTGATCATCATGCTCTGGAGTTGTTGGAGAAGATGTTGACACTTGATCCAGCACAGAGAATTACTGCGAAAGATGCACTTGATGCTGAGTATTTCTGGACAGATCCATTACCATGTGACCCCAAGAGTTTACCCAAGTACGAGTCATCACATGAGTTTCAGACAAAGAAAAAGCGCCAACAGCAACGGCAAAATGAAGAAATGGCTAAGCGTCAGAAAATGCAGCATCCACAGCAGCACAGTCGTCTTCCCCCCATTCAGCAGTCCGGACAACATGGTCAAATGCGGTCAGGACCAAACCAACAGATTCATGGCTCTCAACCCCCAGTTGCTGCAGGACCCACTCATCATTATGGGAAGCCTAGAGGTCCATCTGGTGGACCAGGAAGATATCCTCCCAATGGGAACCAAGGCGGAGGATACAATCACCCAAATCGAGGAGGTCAAGGTGGTGGTTATGGCACTGGACCTTATCCTCCTCAAGGGCGGGGAGCACCTTATGGGTCCAATAACATGCCTGGTGGTGGTCCTCGTGGAGGCGGTGGTGGTGGTGGCGGCAGTGGGTATGGAGTTGGAGCTCCAAATTATCCCCAACAAGGTGGTCCATATGGGGGTTCAGCACCTGGTCGTGGCTCGAACATGATGGGTGGAAACCGCAATCAACAACAGTATGGTTGGCAGCAGTAA 1533 0.4521 MAIAAPGQLNVNESPTCGSRSVDCFEKLEQIGEGTYGQVYMAKEIKTGEIVALKKIRMDNEREGFPITAIREIKILKKLHHENVIKLKEIVTSPDGNKYRGGIYMVFEYMDHDLTGLADRPGMRFTVPQIKCYMRQLLTGLHYCHVNQVLHRDIKGSNLLIDNEGNLKLADFGLARSFSNDQNANLTNRVITLWYRPPELLLGTTKYGPAVDMWSVGCIFAELLQGKPIFPGKDEPEQLNKIYELCGAPTEINWPGVSKIPYYNKFMPTRPMKRRLREVFRHFDHHALELLEKMLTLDPAQRITAKDALDAEYFWTDPLPCDPKSLPKYESSHEFQTKKKRQQQRQNEEMAKRQKMQHPQQHSRLPPIQQSGQHGQMRSGPNQQIHGSQPPVAAGPTHHYGKPRGPSGGPGRYPPNGNQGGGYNHPNRGGQGGGYGTGPYPPQGRGAPYGSNNMPGGGPRGGGGGGGGSGYGVGAPNYPQQGGPYGGSAPGRGSNMMGGNRNQQQYGWQQ 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00649 510 FunFam Cyclin-dependent kinase C-2 12 111 - -
Vimu1g00649 510 CDD STKc_CDK9_like 25 314 - -
Vimu1g00649 510 MobiDBLite consensus disorder prediction 325 510 - -
Vimu1g00649 510 FunFam Cyclin-dependent kinase C-2 112 354 - -
Vimu1g00649 510 ProSitePatterns Serine/Threonine protein kinases active-site signature. 149 161 IPR008271 GO:0004672|GO:0006468
Vimu1g00649 510 Gene3D Phosphorylase Kinase; domain 1 12 111 - -
Vimu1g00649 510 ProSiteProfiles Protein kinase domain profile. 25 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g00649 510 SMART serkin_6 25 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g00649 510 ProSitePatterns Protein kinases ATP-binding region signature. 31 54 IPR017441 GO:0005524
Vimu1g00649 510 PANTHER CELL DIVISION PROTEIN KINASE 23 320 - -
Vimu1g00649 510 MobiDBLite consensus disorder prediction 360 390 - -
Vimu1g00649 510 SUPERFAMILY Protein kinase-like (PK-like) 20 322 IPR011009 -
Vimu1g00649 510 Gene3D Transferase(Phosphotransferase) domain 1 112 354 - -
Vimu1g00649 510 MobiDBLite consensus disorder prediction 495 510 - -
Vimu1g00649 510 Pfam Protein kinase domain 25 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g00649 510 MobiDBLite consensus disorder prediction 327 356 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00649 Vimu-Chr1 4157877 4162571 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g00649 1 510 Core Cell Cycle Gene Families AT5G10270 74.905 0.0 748
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Vimu1g00649 Pkinase 1.4e-75 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00649 K08819 - gmx:100795971 875.93