Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00643 ATGGCTGTCACCTTCTCAGATCTACACACCGAAGAGGGTATCAAATCCCTCGATCAATTCCTTTCTGGGAAAACCTATATTTCTGGGGATCTATTGACAAAGGATGATATCAAAGTGTATGCAGCTGTTGTGGAAAAGCCTGGGGACTCTTTCCCCAATGCTGCCAAGTGGTACGATGTTGTCTCTTCTCAACTTGCCTCAAGCTTCCCTGGGAAGGCTCAAGGGGTTAGATTCAGTACCGTAGCTGCTCCAGCTGAAGCTGCACCTGCCAAAGCGTTGTGTTTTGGAGCAGCTATGAAGTTAGGGTTACGAGGGAGGTATGGGAATGAGAGGCACGACACTATGGGACCTGGATTCCCTTCTGCTGCTACTGCTGATGAAGATGATGATGATCTTGATCTCTTTGGTGACGAGACAGAGGAGGATAAGAAGGCAGCAGAGGAAAGGGAGGCTGCTAAAAAGTCTGCCAAGAAAAAAGAGAGTGGCAAGTCTTCTGTCCTACTCGATGTCAAGCCTTGGGATGATGAGACTGACATGAAGAAGCTGGAAGAGGCTGTCCGCAGTGTTGAGATGCCTGGTTTATTGTGGGGAGCATTGGGATATGGAATCAAGAAGTTGCAGATCATGATGACTATTGTGGATGACCTTGTATCTGTGGACACCCTCATCGAAGAACGCCTGACAGTTGAGCCATGCAACGAGTATATCCAAAGCTGTGACATTGTTGCATTCAACAAAATTTAA 744 0.4718 MAVTFSDLHTEEGIKSLDQFLSGKTYISGDLLTKDDIKVYAAVVEKPGDSFPNAAKWYDVVSSQLASSFPGKAQGVRFSTVAAPAEAAPAKALCFGAAMKLGLRGRYGNERHDTMGPGFPSAATADEDDDDLDLFGDETEEDKKAAEEREAAKKSAKKKESGKSSVLLDVKPWDDETDMKKLEEAVRSVEMPGLLWGALGYGIKKLQIMMTIVDDLVSVDTLIEERLTVEPCNEYIQSCDIVAFNKI 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00643 247 ProSitePatterns Elongation factor 1 beta/beta'/delta chain signature 1. 128 136 IPR001326 GO:0003746|GO:0005853|GO:0006414
Vimu1g00643 247 SUPERFAMILY GST C-terminal domain-like 10 66 IPR036282 -
Vimu1g00643 247 SUPERFAMILY eEF-1beta-like 160 247 IPR036219 -
Vimu1g00643 247 CDD EF1B 166 247 IPR014038 GO:0003746|GO:0006414
Vimu1g00643 247 ProSitePatterns Elongation factor 1 beta/beta'/delta chain signature 2. 236 247 IPR001326 GO:0003746|GO:0005853|GO:0006414
Vimu1g00643 247 Pfam EF-1 guanine nucleotide exchange domain 165 247 IPR014038 GO:0003746|GO:0006414
Vimu1g00643 247 MobiDBLite consensus disorder prediction 111 135 - -
Vimu1g00643 247 Gene3D - 156 247 IPR014717 -
Vimu1g00643 247 PANTHER EF-HAND AND COILED-COIL DOMAIN-CONTAINING FAMILY MEMBER 8 247 - -
Vimu1g00643 247 SMART EF1_GNE_2 163 247 IPR014038 GO:0003746|GO:0006414
Vimu1g00643 247 FunFam Elongation factor 1-beta 1 like 157 247 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00643 Vimu-Chr1 4109499 4112704 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g00643 1 247 Eukaryotic Initiation Factors Gene Family AT5G12110 65.354 1.08e-98 286
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00643 K03232 - gmx:100500082 327.405