Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00640 ATGGTGATGTCAAGTGGAGCAACGCACTGGTGTTATGCGTGCAGACTACCAATTGTGCTTGATGGGGGAGACAGTCTCTGTCCTTACTGTGATGGAGGTTTTGTACAAGAACTTGATGAGTTGCGAGGAGCAGCACCTGCACCCCAGCATTCATATTCTTCATCACAGTCCGGAGAGTTTCATCAAATGCCTGACCTTTTTGATGCTATACATGCTTTCATGGGGCAGAGAGGTTCTGACCAGAGATTCGGGCTTATGGATGCTGTTGATAATTTCATGAGGCATAGAATGGCTGGAAGAAACTCAAACTTTGATGTTAGAGCAAGGTCAGGTTCTTTCCCAGCTCCTGAACAGAGTTGGGGTGTTTTCAGTTCTGGTCCTTATTTAATATTTCATGGTCAAGTTCCTGGATTCACCTTGGCCAATGGCAGCCCAAGAGGTGGTCCTAGGCGTGTTGATTTTGGTGATTACTTTATGGGTCCTGGACTGGAAGAACTTATTGAGCAACTCACCATGAATGACCGGCGAGGTCCACCTCCAGCGGCACGTTCTTCGATCGATGCTATGCCTACTATTAGGATAACACAGGCACATCTTCGCTTGGATTCACACTGTCCAGTTTGTAAAGATAAATTTGAACTAGGCACTGAAGCCAGAGAGATGCCTTGCAACCATATCTACCATTCTGACTGCATTGTTCCTTGGTTGGTTCAGCATAACTCGTGTCCTGTTTGCCGTGTTGAGTTGCCACCTCAAGGACAGGTTAATTCCCGCAGTGCTCGAAGTTTTGGAGGAAGGAATGCCAGCACCAGCAGTGGCACTGACAGCAGCTCCAGGAGCAGGGAGAACAGCAGCACTCAGAACCATGGAAGGAGAAACCCCTTATCATTTTTGTGGCCATTTCGCTCCTCTTCTAGCTCAAACAATAGTCATTATTCTGAGACTGGGGGAAGCAGCTCTTCAACCACTCCTGATCAGAATAATGGAACAAGTTATAGTGGTTGGCCTTTTGATCACTAG 1020 0.4706 MVMSSGATHWCYACRLPIVLDGGDSLCPYCDGGFVQELDELRGAAPAPQHSYSSSQSGEFHQMPDLFDAIHAFMGQRGSDQRFGLMDAVDNFMRHRMAGRNSNFDVRARSGSFPAPEQSWGVFSSGPYLIFHGQVPGFTLANGSPRGGPRRVDFGDYFMGPGLEELIEQLTMNDRRGPPPAARSSIDAMPTIRITQAHLRLDSHCPVCKDKFELGTEAREMPCNHIYHSDCIVPWLVQHNSCPVCRVELPPQGQVNSRSARSFGGRNASTSSGTDSSSRSRENSSTQNHGRRNPLSFLWPFRSSSSSNNSHYSETGGSSSSTTPDQNNGTSYSGWPFDH 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00640 339 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 168 252 IPR013083 -
Vimu1g00640 339 ProSiteProfiles Zinc finger RING-type profile. 205 246 IPR001841 -
Vimu1g00640 339 MobiDBLite consensus disorder prediction 254 339 - -
Vimu1g00640 339 Pfam Ring finger domain 204 246 IPR001841 -
Vimu1g00640 339 CDD RING-H2_RNF126-like 205 246 - -
Vimu1g00640 339 SMART ring_2 205 245 IPR001841 -
Vimu1g00640 339 FunFam E3 ubiquitin-protein ligase RING1-like 169 252 - -
Vimu1g00640 339 Pfam zinc-ribbon 8 38 IPR039525 GO:0061630
Vimu1g00640 339 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 103 250 - -
Vimu1g00640 339 SUPERFAMILY RING/U-box 185 252 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00640 Vimu-Chr1 4095140 4097572 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g00640 149 250 C3H Transcription Factor Family AT5G01980 45.192 5.91e-26 106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00640 K11982 - gmx:100813674 577.015
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01824 6 16457490 16461209 Vimu1g00640 1 4095140 4097572 ECH
Vimu1g00640 1 4095140 4097572 Vimu1g00640 1 4095140 4097572 ECH