Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00636 ATGAGGAAGAAATTGGATACTCGTTTCCCTGCGGCCAGGATTAAGAAAATTATGCAAGCTGATGAGGATGTAGGGAAGATTGCAATGGCTGTGCCTCTTTTAGTTTCTAAAGCCCTAGAGCTATTTCTACAAGATTTGTGTGATCGAACATATGAGATAACTCTGAGGAGGGGAGCTAAGACTATGAATGCTTTTCATTTAAAACAGTGTGTGCAGACTTTTAACGTCTTTGACTTTCTGAAAGATATTGTCAGCAAGGTTCCTGATTTAGGCGGTTCTGCTGCAAATTGTGATGACCATACTGTCAAGAGGAGGAAAGTTGCTGAAGATGATAATGATAGCCACGAGGAGCCCAAGAGAAATAACAAGGCGGAGCCGGGACAAACCAGTGGCAGAGGAAGGGGTAGGGGAAGAGGAAGGGGTCGTGGCCGTGGAAGTAGAAATGTAGATCAAGAGATGAATTCACAAGCCAAGTGTGCAGAAGATTCTGATGCATTGAAGCAAAATGAAAAGCAGACTCAAAGCAATGAAAGCATGGAAAACGCGTCATCACCTGAAGAAGTTAAGCAGACTTTTCCAGTTAGCAAGCCGGCTCAGGTGTCCATTCGAAATTTTGACTTAAACATGGACCCAGATGAGAATATGGAATCGTTAACATCACCAACTGCTGTTCCAACTAGTTCATCAGCAAAATCAATATCAGAAGAGAAACATCATGAGGAATATCCTGGATGGTCCTTGTCTGATATGGAAAAAATGACCATTGATCCCATTCAACTAGCTAACATAAATGGAAGGATTGATGAAGATGAAGAGGATTATGATGAAGAAATGTAA 837 0.417 MRKKLDTRFPAARIKKIMQADEDVGKIAMAVPLLVSKALELFLQDLCDRTYEITLRRGAKTMNAFHLKQCVQTFNVFDFLKDIVSKVPDLGGSAANCDDHTVKRRKVAEDDNDSHEEPKRNNKAEPGQTSGRGRGRGRGRGRGRGSRNVDQEMNSQAKCAEDSDALKQNEKQTQSNESMENASSPEEVKQTFPVSKPAQVSIRNFDLNMDPDENMESLTSPTAVPTSSSAKSISEEKHHEEYPGWSLSDMEKMTIDPIQLANINGRIDEDEEDYDEEM 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00636 278 MobiDBLite consensus disorder prediction 148 162 - -
Vimu1g00636 278 MobiDBLite consensus disorder prediction 169 202 - -
Vimu1g00636 278 MobiDBLite consensus disorder prediction 213 231 - -
Vimu1g00636 278 MobiDBLite consensus disorder prediction 232 246 - -
Vimu1g00636 278 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 7 156 - -
Vimu1g00636 278 FunFam dr1-associated corepressor homolog 1 86 - -
Vimu1g00636 278 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 8 71 IPR003958 -
Vimu1g00636 278 SUPERFAMILY Histone-fold 4 88 IPR009072 GO:0046982
Vimu1g00636 278 Gene3D Histone, subunit A 1 86 IPR009072 GO:0046982
Vimu1g00636 278 MobiDBLite consensus disorder prediction 98 123 - -
Vimu1g00636 278 MobiDBLite consensus disorder prediction 90 248 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00636 Vimu-Chr1 4059995 4063198 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g00636 1 267 CCAAT-HAP5 Transcription Factor Family AT3G12480 46.758 1.97e-60 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Vimu1g00636 CBFD_NFYB_HMF 2.1e-18 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00636 K21752 - gmx:100814800 414.846
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g00636 1 4059995 4063198 Vimu1g00636 1 4059995 4063198 ECH